PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC052746.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | GRAS | ||||||||
Protein Properties | Length: 468aa MW: 53771.9 Da PI: 10.245 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 332.1 | 1e-101 | 96 | 466 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 l++lL++cA+av+s+ ++ a+alL++++++asp gd +qRla+yf+++L+arla+++s++y+ l ++t+ ++ l+a++l+ ++P+ + s+ + EcC052746.20 96 LRTLLIQCAQAVASNYHRSANALLNEIRKHASPFGDGTQRLAHYFANGLEARLAGTGSQIYRGLVNRKTT---AADMLNAYQLYLAACPFQRYSNAV 189 6789************************************************************999999...9*********************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192 Il+ v+ + ++H+ Df+i +G+ W +L+q L++Rp + p+lRiTg++ p++g +e+++etg+rLa++A++++vpfe+n+ +akr+e +ele EcC052746.20 190 PIFSILDTVADKMKIHVTDFGILYGFRWTTLIQRLSQRPCP-PKLRITGIDLPQPGfrPAERVKETGQRLANYAQSFNVPFEYNA-IAKRWEFIELE 284 **************************************876.9************9*****************************.7********** PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289 e++++++E+++V+++++ ++l+de+ es rd vL+l+++ +P+++++ + hns+ F++rf eal+++s+ fd+l++ +p e++er+ +E+ + EcC052746.20 285 EFKIDRDEVTIVSCMFRFKSLFDETIVEESSRDIVLNLIRRAQPDLFIHGVINGTHNSPFFVTRFREALHHFSSPFDMLDTIVPCENQERMLIEKDM 381 ************************************************************************************************* PP GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 lgre+ n +aceg er+e e++++ + r ++aGF +vpls + a+ + ++ + + + v+e ++l+lgWk+r L+++S W+ EcC052746.20 382 LGREALNTIACEGWERVEGPESYKQRQLRNMRAGFVQVPLSRRLAQFVINNIALRYHKDFVVDEVGKWLLLGWKGRFLYAFSTWK 466 ******************************************99888777777777677*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 57.426 | 70 | 446 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.5E-99 | 96 | 466 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
RLTKGTALVH RREKRVSIGR KETRKREVAK QEESVLRSDA FDVVLLSDQG EGLARLMNLR 60 ASLKNGVNEI EHKIQEPKAG RGRGKKKRGK VEVVDLRTLL IQCAQAVASN YHRSANALLN 120 EIRKHASPFG DGTQRLAHYF ANGLEARLAG TGSQIYRGLV NRKTTAADML NAYQLYLAAC 180 PFQRYSNAVP IFSILDTVAD KMKIHVTDFG ILYGFRWTTL IQRLSQRPCP PKLRITGIDL 240 PQPGFRPAER VKETGQRLAN YAQSFNVPFE YNAIAKRWEF IELEEFKIDR DEVTIVSCMF 300 RFKSLFDETI VEESSRDIVL NLIRRAQPDL FIHGVINGTH NSPFFVTRFR EALHHFSSPF 360 DMLDTIVPCE NQERMLIEKD MLGREALNTI ACEGWERVEG PESYKQRQLR NMRAGFVQVP 420 LSRRLAQFVI NNIALRYHKD FVVDEVGKWL LLGWKGRFLY AFSTWKLA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-40 | 100 | 466 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018721242.1 | 0.0 | PREDICTED: scarecrow-like protein 9 | ||||
Refseq | XP_018721244.1 | 0.0 | PREDICTED: scarecrow-like protein 9 | ||||
Swissprot | O80933 | 1e-172 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | A0A059A8A9 | 0.0 | A0A059A8A9_EUCGR; Uncharacterized protein | ||||
STRING | XP_010037825.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-173 | GRAS family protein |