PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC052746.20
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 468aa    MW: 53771.9 Da    PI: 10.245
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC052746.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS332.11e-101964661374
          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                   l++lL++cA+av+s+ ++ a+alL++++++asp gd +qRla+yf+++L+arla+++s++y+ l  ++t+    ++ l+a++l+  ++P+ + s+ +
  EcC052746.20  96 LRTLLIQCAQAVASNYHRSANALLNEIRKHASPFGDGTQRLAHYFANGLEARLAGTGSQIYRGLVNRKTT---AADMLNAYQLYLAACPFQRYSNAV 189
                   6789************************************************************999999...9*********************** PP

          GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                       Il+ v+ + ++H+ Df+i +G+ W +L+q L++Rp + p+lRiTg++ p++g   +e+++etg+rLa++A++++vpfe+n+ +akr+e +ele
  EcC052746.20 190 PIFSILDTVADKMKIHVTDFGILYGFRWTTLIQRLSQRPCP-PKLRITGIDLPQPGfrPAERVKETGQRLANYAQSFNVPFEYNA-IAKRWEFIELE 284
                   **************************************876.9************9*****************************.7********** PP

          GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                   e++++++E+++V+++++ ++l+de+   es rd vL+l+++ +P+++++   +  hns+ F++rf eal+++s+ fd+l++ +p e++er+ +E+ +
  EcC052746.20 285 EFKIDRDEVTIVSCMFRFKSLFDETIVEESSRDIVLNLIRRAQPDLFIHGVINGTHNSPFFVTRFREALHHFSSPFDMLDTIVPCENQERMLIEKDM 381
                   ************************************************************************************************* PP

          GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   lgre+ n +aceg er+e  e++++ + r ++aGF +vpls + a+ +   ++  + + + v+e  ++l+lgWk+r L+++S W+
  EcC052746.20 382 LGREALNTIACEGWERVEGPESYKQRQLRNMRAGFVQVPLSRRLAQFVINNIALRYHKDFVVDEVGKWLLLGWKGRFLYAFSTWK 466
                   ******************************************99888777777777677*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.42670446IPR005202Transcription factor GRAS
PfamPF035143.5E-9996466IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
RLTKGTALVH RREKRVSIGR KETRKREVAK QEESVLRSDA FDVVLLSDQG EGLARLMNLR  60
ASLKNGVNEI EHKIQEPKAG RGRGKKKRGK VEVVDLRTLL IQCAQAVASN YHRSANALLN  120
EIRKHASPFG DGTQRLAHYF ANGLEARLAG TGSQIYRGLV NRKTTAADML NAYQLYLAAC  180
PFQRYSNAVP IFSILDTVAD KMKIHVTDFG ILYGFRWTTL IQRLSQRPCP PKLRITGIDL  240
PQPGFRPAER VKETGQRLAN YAQSFNVPFE YNAIAKRWEF IELEEFKIDR DEVTIVSCMF  300
RFKSLFDETI VEESSRDIVL NLIRRAQPDL FIHGVINGTH NSPFFVTRFR EALHHFSSPF  360
DMLDTIVPCE NQERMLIEKD MLGREALNTI ACEGWERVEG PESYKQRQLR NMRAGFVQVP  420
LSRRLAQFVI NNIALRYHKD FVVDEVGKWL LLGWKGRFLY AFSTWKLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-401004668375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018721242.10.0PREDICTED: scarecrow-like protein 9
RefseqXP_018721244.10.0PREDICTED: scarecrow-like protein 9
SwissprotO809331e-172SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A059A8A90.0A0A059A8A9_EUCGR; Uncharacterized protein
STRINGXP_010037825.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-173GRAS family protein