PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC052746.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRAS

Protein Properties

Length: 451aa MW: 51899.7 Da PI: 9.4445

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC052746.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	357.8	1.6e-109	80	449	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 ++lL++cA+av+s+d++ a+alL++++++asp gd +qRla++f+++L+arla+++ ++y+ l ++t+ ++ l+a++l+ ++P+ + s+ + EcC052746.10 80 RTLLIQCAQAVASNDHRSANALLNEIRKHASPFGDGTQRLAHCFANGLEARLAGTGGQIYRGLVNRKTT---AADMLNAYHLYLAACPFQRYSNTVS 173 689**********************************************************999999...9******************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 +++ + v+ + r+HiiDf+i +G+ Wp+L+q L+ Rp + p+lRiTg++ p++g +++++etg+rLa++Ae+++vpfe+n+ +akr+e +elee EcC052746.10 174 CRMVIDTVADKMRIHIIDFGILYGFRWPTLIQLLSRRPCP-PKLRITGIDLPQPGfrPAQRIKETGRRLANYAESFNVPFEYNA-IAKRWEFIELEE 268 *******************************99865.9********9*************************.7******* PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290 L+++++E+++Vn++++ ++l+de+v+ es+rd vL+l+++ +P+++++ + ++n++ F++rf eal+++s+lfd+l++ +p e++er+ +E++ l EcC052746.10 269 LKIDRDEVTIVNCMFRFENLFDETVAEESPRDIVLNLIRRAQPDLFIHGVINGNYNAPFFVTRFREALHHFSSLFDMLDTIIPCENQERMLIEKVTL 365 ********************************************************************************************* PP GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +re+ n +aceg er+er e++++W+ r ++aGF +vpls + a+ + ++ + + + v+e ++l++gWk+r L+++S W+ EcC052746.10 366 EREALNTIACEGWERVERPESYKQWQLRNMRAGFVQVPLSRRLAQFVFNKIASRYHKDFVVDEVGKWLLIGWKGRFLYAFSTWK 449 *************************************98887776666666566***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.775	53	429	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.4E-107	80	449	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
GNMEERSSKQ AFVHEESVLR SDAFDAVLLN IQGEGLAHLM NLRASLKHRV NEIAHKIEEP 60 KGGRGHGKKK RGKVEVVDVR TLLIQCAQAV ASNDHRSANA LLNEIRKHAS PFGDGTQRLA 120 HCFANGLEAR LAGTGGQIYR GLVNRKTTAA DMLNAYHLYL AACPFQRYSN TVSCRMVIDT 180 VADKMRIHII DFGILYGFRW PTLIQLLSRR PCPPKLRITG IDLPQPGFRP AQRIKETGRR 240 LANYAESFNV PFEYNAIAKR WEFIELEELK IDRDEVTIVN CMFRFENLFD ETVAEESPRD 300 IVLNLIRRAQ PDLFIHGVIN GNYNAPFFVT RFREALHHFS SLFDMLDTII PCENQERMLI 360 EKVTLEREAL NTIACEGWER VERPESYKQW QLRNMRAGFV QVPLSRRLAQ FVFNKIASRY 420 HKDFVVDEVG KWLLIGWKGR FLYAFSTWKP A

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

GNMEERSSKQ AFVHEESVLR SDAFDAVLLN IQGEGLAHLM NLRASLKHRV NEIAHKIEEP  60
KGGRGHGKKK RGKVEVVDVR TLLIQCAQAV ASNDHRSANA LLNEIRKHAS PFGDGTQRLA  120
HCFANGLEAR LAGTGGQIYR GLVNRKTTAA DMLNAYHLYL AACPFQRYSN TVSCRMVIDT  180
VADKMRIHII DFGILYGFRW PTLIQLLSRR PCPPKLRITG IDLPQPGFRP AQRIKETGRR  240
LANYAESFNV PFEYNAIAKR WEFIELEELK IDRDEVTIVN CMFRFENLFD ETVAEESPRD  300
IVLNLIRRAQ PDLFIHGVIN GNYNAPFFVT RFREALHHFS SLFDMLDTII PCENQERMLI  360
EKVTLEREAL NTIACEGWER VERPESYKQW QLRNMRAGFV QVPLSRRLAQ FVFNKIASRY  420
HKDFVVDEVG KWLLIGWKGR FLYAFSTWKP A

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	6e-44	85	450	25	380	Protein SCARECROW
5b3h_A	6e-44	85	450	24	379	Protein SCARECROW
5b3h_D	6e-44	85	450	24	379	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010042112.1	0.0	PREDICTED: scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A059A778	0.0	A0A059A778_EUCGR; Uncharacterized protein
STRING	XP_010042112.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein