PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC052717.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

M-type_MADS

Protein Properties

Length: 69aa MW: 8006.4 Da PI: 10.2914

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC052717.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.9	2e-31	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRrng+lKKA+ELSvLCdaevaviifs++g+lye+ss EcC052717.20 10 RIENVTSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKGRLYEFSS 59 8***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.5E-40	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	32.66	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	8.98E-38	2	61	No hit	No description
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	7.19E-30	3	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.6E-32	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.0E-28	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.6E-32	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.6E-32	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 69 aa Download sequence Send to blast
MARGKIQMRR IENVTSRQVT FSKRRNGLLK KAYELSVLCD AEVAVIIFSQ KGRLYEFSSN 60 SEYVCILIF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	6e-19	1	61	1	61	Myocyte-specific enhancer factor 2B
1tqe_Q	6e-19	1	61	1	61	Myocyte-specific enhancer factor 2B
1tqe_R	6e-19	1	61	1	61	Myocyte-specific enhancer factor 2B
1tqe_S	6e-19	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_A	6e-19	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_B	6e-19	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_C	6e-19	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_D	6e-19	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_E	6e-19	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_F	6e-19	1	61	1	61	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	MADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269\|PubMed:21609362, ECO:0000269\|PubMed:21689171}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010035073.2	1e-36	PREDICTED: MADS-box protein AGL42 isoform X1
Swissprot	Q9FIS1	3e-30	AGL42_ARATH; MADS-box protein AGL42
TrEMBL	A0A058ZX11	3e-35	A0A058ZX11_EUCGR; Uncharacterized protein
STRING	XP_010035073.1	5e-36	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62165.4	9e-33	AGAMOUS-like 42