PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC052606.50 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NF-YC | ||||||||
Protein Properties | Length: 135aa MW: 14931.1 Da PI: 10.1449 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 45.8 | 1.3e-14 | 12 | 93 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivpr 98 + +lP r+k+i+k d d++++ +ea l++ + +lf+ l+ rs a e+kr+t+k ++ av+r + dfl+d p EcC052606.50 12 RPDLPTGRVKRIMKLDRDINKVNSEALLLVTCSTQLFLEFLAERSAQVAAEKKRKTVKLDQMRIAVKRHRpTSDFLLDSLPA 93 5689**********************************9***************************9975389*****9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 4.02E-16 | 13 | 92 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.3E-16 | 15 | 77 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.7E-17 | 15 | 92 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005819 | Cellular Component | spindle | ||||
GO:0005874 | Cellular Component | microtubule | ||||
GO:0009524 | Cellular Component | phragmoplast | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MAEEDDAAST IRPDLPTGRV KRIMKLDRDI NKVNSEALLL VTCSTQLFLE FLAERSAQVA 60 AEKKRKTVKL DQMRIAVKRH RPTSDFLLDS LPAPAQSVDG QSAEKVRSRP GAEKPAPAGT 120 RRIDDFFGKP VSEVS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010044803.1 | 2e-92 | PREDICTED: nuclear transcription factor Y subunit gamma | ||||
TrEMBL | A0A2N9HE56 | 8e-60 | A0A2N9HE56_FAGSY; Uncharacterized protein | ||||
STRING | XP_010044803.1 | 7e-92 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43250.1 | 7e-53 | nuclear factor Y, subunit C13 |