PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC052497.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 548aa    MW: 61317 Da    PI: 5.7375
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC052497.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS407.81e-1241795472373
          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                   +++L+ cA+av++ d+ ++ al++ l+ ++s +gdp+qRl ay++e+L+arl +s+s +y++l+++e +    se +++++++++++P+ kf++  a
  EcC052497.20 179 KDVLIVCAQAVAEADMPKTAALMEVLERMVSVSGDPIQRLGAYLLEGLRARLESSGSIIYRKLKCKEPT---GSELMSYMSILYQICPYWKFAYESA 272
                   689*****************************************************************9...9************************ PP

          GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                   N  I ea++ e+r+HiiDf+i qG QW++++q La R++gpp +RiTgv++++s   +   l  +g+rL+k+Ae +gvpfef++ +a   +++e e+
  EcC052497.20 273 NVVIGEAIKYESRIHIIDFQIAQGSQWIPIIQGLAGRTGGPPLIRITGVDDSQSAhaRGGGLDIVGKRLEKVAELCGVPFEFHA-AAMCGSQVERED 368
                   ***************************************************9988889999***********************.899********* PP

          GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                   Lr +pgEa+aVn+ + lh+++desvs++++rd++L+lvkslsPkvv++veqe+++n+++F +rf+e+l+yy+a+f+s+++   r++++ri+ E++++
  EcC052497.20 369 LRARPGEAIAVNFPFVLHHMPDESVSTHNHRDRLLRLVKSLSPKVVTLVEQESKTNTSPFYQRFIETLDYYTAMFESIDVACRRDDKQRISAEQHCV 465
                   ************************************************************************************************* PP

          GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                   +r+ivn++ace++er+erhe l+kWr+r+++aGF++ pls+ +++ ++ llr+++++ yr+ee++g+l+l W++r++ + SaW
  EcC052497.20 466 ARDIVNMIACEETERVERHELLGKWRSRFRMAGFQQFPLSSAVTDAVRNLLREYNEN-YRIEEKDGALYLWWRNRAMATSSAW 547
                   *******************************************************55.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.777152529IPR005202Transcription factor GRAS
PfamPF035143.5E-122179547IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0004797Molecular Functionthymidine kinase activity
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MQTSHNRQNS AGIHGLYHQP VQDIDPYCSS NFQIMENNVS PDIGSQGTNF SIQGYDGQYF  60
TLDSAPAVSS FGSYDSPSAV SVASNRSPFS TQGSHSYVSD AQHSSDYLYG SPISGSSVAN  120
GGSQMWDKLR EIENSLFGPE SDISDSCNCC LNSGSHQFPS TGQWNVNQMI EMIPKWDLKD  180
VLIVCAQAVA EADMPKTAAL MEVLERMVSV SGDPIQRLGA YLLEGLRARL ESSGSIIYRK  240
LKCKEPTGSE LMSYMSILYQ ICPYWKFAYE SANVVIGEAI KYESRIHIID FQIAQGSQWI  300
PIIQGLAGRT GGPPLIRITG VDDSQSAHAR GGGLDIVGKR LEKVAELCGV PFEFHAAAMC  360
GSQVEREDLR ARPGEAIAVN FPFVLHHMPD ESVSTHNHRD RLLRLVKSLS PKVVTLVEQE  420
SKTNTSPFYQ RFIETLDYYT AMFESIDVAC RRDDKQRISA EQHCVARDIV NMIACEETER  480
VERHELLGKW RSRFRMAGFQ QFPLSSAVTD AVRNLLREYN ENYRIEEKDG ALYLWWRNRA  540
MATSSAWW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-541825478374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010052945.10.0PREDICTED: scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A059CFS50.0A0A059CFS5_EUCGR; Uncharacterized protein
STRINGXP_010052945.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13