PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC052456.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 344aa    MW: 37540 Da    PI: 7.2887
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC052456.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.1e-171360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l++ ++ +G g+W+++++  g+ R++k+c++rw +yl
     EcC052456.20 13 RGLWSPEEDEKLARFITTHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60
                     788*******************************************97 PP
2Myb_DNA-binding50.64.4e-1666109146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+  ++d+++ lG++ W+ Ia++++ gRt++++k++w++
     EcC052456.20  66 RGSFSAQEERTIIDVHRILGNR-WSQIAKHLP-GRTDNEVKNFWNS 109
                      899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-25463IPR009057Homeodomain-like
PROSITE profilePS5129416.677860IPR017930Myb domain
SuperFamilySSF466895.62E-2910107IPR009057Homeodomain-like
SMARTSM007172.8E-121262IPR001005SANT/Myb domain
PfamPF002491.3E-151360IPR001005SANT/Myb domain
CDDcd001674.90E-111660No hitNo description
PROSITE profilePS5129425.23161115IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.8E-2564115IPR009057Homeodomain-like
SMARTSM007173.1E-1565113IPR001005SANT/Myb domain
PfamPF002491.5E-1466109IPR001005SANT/Myb domain
CDDcd001671.69E-1168108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGHHCCTKQK VKRGLWSPEE DEKLARFITT HGHGSWSSVP KLAGLQRCGK SCRLRWINYL  60
RPDLKRGSFS AQEERTIIDV HRILGNRWSQ IAKHLPGRTD NEVKNFWNSC IKKKLLAQGL  120
DPNTHNLLST TSSLKNNNGG NVNSSSSMFH MSTDSSTSNC SMDLKIPFVT LPSVPCPDQA  180
TNPICTGLFP PILHATSSSS NLVSFEYHQQ NPSASSPHGL MDLAAAGRSP SSFSSLLNSF  240
SSGLAGNGEE SSLWDCGLEA NAVLAAPRHE DTSQVQMLQQ PPGLKQANEK NGKLGVESDN  300
CDFMSTDAMD SSFDFDFVER SSAGLAAGGM YYNLSPIDQL AWNC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-31131157108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058069.10.0PREDICTED: myb-related protein Zm38
TrEMBLA0A059CAU10.0A0A059CAU1_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010058069.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.12e-82myb domain protein 67