PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC052452.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family TCP
Protein Properties Length: 422aa    MW: 44619.3 Da    PI: 7.5029
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC052452.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.37.9e-4075227389
           TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 
                   +k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s++          
  EcC052452.20  75 PKRTSTKDRHTKVDGRGRRIRMPAQCAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSAPshfrsgyfsp 171
                   799*****************************************************************99986666666666444445566667766 PP

           TCP  89 .......................................................k 89 
                                                                          +
  EcC052452.20 172 astsfaaasphlrsmmlhgvsqwersmaaavdepvtasqhrilfpgvglssdnsfN 227
                   55555555555555555555555555555555555555555555555555555543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-4178269IPR005333Transcription factor, TCP
PROSITE profilePS5136927.94680134IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MDDDHGFRRP NFPLQLLERS NDHHRQPPPP PPSSAPSYAS LAISGGGGGG GGEPSTGRPN  60
SNHLQAPDLP KKPLPKRTST KDRHTKVDGR GRRIRMPAQC AARVFQLTRE LGHKTDGETI  120
EWLLQQAEPA VIAATGTGTI PANFTSLNIS LRSSGSSMSA PSHFRSGYFS PASTSFAAAS  180
PHLRSMMLHG VSQWERSMAA AVDEPVTASQ HRILFPGVGL SSDNSFNANS SAMSEAKQEL  240
RDTDAPAVAE EEGEEASLGR KRRPEQPEFS NQSMMMGNYL LQPPGAVAGS SSSAGSPTTF  300
WMMPNSSSQV ISGDPLWTLP SGASNSNASM YRGSISSGLH LMNFPIPMTL LSSQQLGPGI  360
SGSGGVTVAD SHLGMLAALN TFRPGGGGSE SQASGSHPHH HGGDQDGRDT ASHHSHHHHH  420
QH
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018720264.11e-137PREDICTED: transcription factor TCP14, partial
SwissprotQ93Z002e-52TCP14_ARATH; Transcription factor TCP14
TrEMBLA0A059D8L41e-136A0A059D8L4_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010046658.11e-137(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.17e-47TCP family protein
Publications ? help Back to Top
  1. Steiner E, et al.
    The Putative O-Linked N-Acetylglucosamine Transferase SPINDLY Inhibits Class I TCP Proteolysis to Promote Sensitivity to Cytokinin.
    Plant Physiol., 2016. 171(2): p. 1485-94
    [PMID:27208284]
  2. Yang L, et al.
    Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence.
    Cell Host Microbe, 2017. 21(2): p. 156-168
    [PMID:28132837]
  3. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]