PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC052419.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRAS

Protein Properties

Length: 664aa MW: 76179.5 Da PI: 7.4454

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC052419.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	356.7	3.6e-109	287	662	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 ++lL++cA+av+s+d++ a+alL++++++asp g+ +qRla+yf++ L+ rla+++s++++ ++ ++t+ ++ l+a++l+ ++P+++ s + EcC052419.10 287 RTLLIQCAQAVASNDHRSANALLNEIRKHASPFGNGTQRLAHYFANSLEGRLAGTGSQICRGIANRKTT---AADMLNAHHLYLAACPFHRYSIAMS 380 689**********************************************************999999...9******************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 N ++l+ v+ + r+HiiDf+i +G+QWp+L+q+L++Rp + +lRiTg++ p++g +e+++etg+rLa++Ae+++vpf++n+ +akr+e +elee EcC052419.10 381 NMTVLDRVADKMRIHIIDFGIHYGFQWPSLIQSLSQRPCP-TKLRITGIELPQPGfrPAERVKETGQRLANYAESFNVPFDYNA-IAKRWELIELEE 475 *********************************876.79*******9*************************.7******* PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsles......erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 L+++++E++++n++++ ++l+de+ + es rd vL+l+++ +P+++++ +a+hn++ F++rf ea +++s+lfd+l++ +pre++er+ EcC052419.10 476 LKIDRDEVTIINCMFRFKNLFDETITEESsrdiecSRDIVLNLIRRAQPDLFIHGVINANHNAPFFVTRFREASHHFSSLFDMLDTIIPRENQERML 572 *****************99988888777777899******************************************************* PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +E+e+lgr++ n +aceg er+er e++++W+ r ++aGF +vpls + + + ++ ++ + + v+e ++l+lgWk+r L+++S W+ EcC052419.10 573 IEKEMLGRQALNTIACEGWERVERPESYKQWQLRNMRAGFVQVPLSRRLKQFVFNEMASHYHKDFVVDEVGKWLLLGWKGRFLFAFSTWK 662 ********************************************9998888888888777***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.252	260	642	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.2E-106	287	662	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 664 aa Download sequence Send to blast
MDHLVDVAPF SNDCHDVPYT EETGFSDAVF DYISRILMEE DIEEKTCMLQ DSLDLLSAEK 60 SFYEVLGKKY PPSPEPNRTN CIAFNDKHTN DSLLDSTRYT STIGSRKNGY YTNIGWVQNQ 120 SNYGTMSFEK DISPVAFQPN RRGNAQRLDL CGESQLIRQF RMGVEESSKF LPNQASTELL 180 HQEPNGKIDK ADCFGALKRK ESLHREEGNM EERSSKQAFV YEESVLRSDA FDVVLLSGQG 240 KGLARLMNLC ASLKHRVNEI AHEIEEPKGG RGRVKKKRGK VEVVDVRTLL IQCAQAVASN 300 DHRSANALLN EIRKHASPFG NGTQRLAHYF ANSLEGRLAG TGSQICRGIA NRKTTAADML 360 NAHHLYLAAC PFHRYSIAMS NMTVLDRVAD KMRIHIIDFG IHYGFQWPSL IQSLSQRPCP 420 TKLRITGIEL PQPGFRPAER VKETGQRLAN YAESFNVPFD YNAIAKRWEL IELEELKIDR 480 DEVTIINCMF RFKNLFDETI TEESSRDIEC SRDIVLNLIR RAQPDLFIHG VINANHNAPF 540 FVTRFREASH HFSSLFDMLD TIIPRENQER MLIEKEMLGR QALNTIACEG WERVERPESY 600 KQWQLRNMRA GFVQVPLSRR LKQFVFNEMA SHYHKDFVVD EVGKWLLLGW KGRFLFAFST 660 WKPA

Sequence ? help Back to Top

Protein Sequence Length: 664 aa Download sequence Send to blast

MDHLVDVAPF SNDCHDVPYT EETGFSDAVF DYISRILMEE DIEEKTCMLQ DSLDLLSAEK  60
SFYEVLGKKY PPSPEPNRTN CIAFNDKHTN DSLLDSTRYT STIGSRKNGY YTNIGWVQNQ  120
SNYGTMSFEK DISPVAFQPN RRGNAQRLDL CGESQLIRQF RMGVEESSKF LPNQASTELL  180
HQEPNGKIDK ADCFGALKRK ESLHREEGNM EERSSKQAFV YEESVLRSDA FDVVLLSGQG  240
KGLARLMNLC ASLKHRVNEI AHEIEEPKGG RGRVKKKRGK VEVVDVRTLL IQCAQAVASN  300
DHRSANALLN EIRKHASPFG NGTQRLAHYF ANSLEGRLAG TGSQICRGIA NRKTTAADML  360
NAHHLYLAAC PFHRYSIAMS NMTVLDRVAD KMRIHIIDFG IHYGFQWPSL IQSLSQRPCP  420
TKLRITGIEL PQPGFRPAER VKETGQRLAN YAESFNVPFD YNAIAKRWEL IELEELKIDR  480
DEVTIINCMF RFKNLFDETI TEESSRDIEC SRDIVLNLIR RAQPDLFIHG VINANHNAPF  540
FVTRFREASH HFSSLFDMLD TIIPRENQER MLIEKEMLGR QALNTIACEG WERVERPESY  600
KQWQLRNMRA GFVQVPLSRR LKQFVFNEMA SHYHKDFVVD EVGKWLLLGW KGRFLFAFST  660
WKPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-44	290	662	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010037827.1	0.0	PREDICTED: scarecrow-like protein 9
TrEMBL	A0A059A7G0	0.0	A0A059A7G0_EUCGR; Uncharacterized protein
STRING	XP_010037827.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM358	27	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein