PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC052212.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 349aa    MW: 38876.1 Da    PI: 5.5164
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC052212.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.4e-151663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++ Ed +l+  ++++G ++W++ ++  g+ R++k+c++rw +yl
     EcC052212.20 16 RGPWSPAEDARLISFIQKYGHENWRALPKQAGLMRCGKSCRLRWINYL 63
                     89********************************************97 PP
2Myb_DNA-binding54.33.1e-1769114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE++ ++++++++G++ W++Ia++++ gRt++++k+ w+++l
     EcC052212.20  69 RGNFTKEEEDTILQLHHLMGNK-WSKIASHLP-GRTDNEIKNVWNTHL 114
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.1E-24766IPR009057Homeodomain-like
PROSITE profilePS5129415.8111163IPR017930Myb domain
SuperFamilySSF466894.49E-3014110IPR009057Homeodomain-like
SMARTSM007171.2E-111565IPR001005SANT/Myb domain
PfamPF002493.7E-141663IPR001005SANT/Myb domain
CDDcd001671.46E-91863No hitNo description
PROSITE profilePS5129425.94764118IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2767118IPR009057Homeodomain-like
SMARTSM007173.1E-1668116IPR001005SANT/Myb domain
PfamPF002492.0E-1669114IPR001005SANT/Myb domain
CDDcd001671.22E-1171114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGKGRAPCCD KNKVKRGPWS PAEDARLISF IQKYGHENWR ALPKQAGLMR CGKSCRLRWI  60
NYLRPDVKRG NFTKEEEDTI LQLHHLMGNK WSKIASHLPG RTDNEIKNVW NTHLKKRLAS  120
KGLGQSKHES SISSSSSYSS ASSLVSGASA ERDAQVDLER STGQGPLDEK SCGQEGMVPL  180
PLPNEAEEVQ EKSAKRMPDN KDSKDRSSTF SGSNEPAHLK DSEEQMDSFF SFSSPYDARS  240
ALEPEEVNKP DTNSNGLGNF MIDIPFECDV EFWNMLDSLE PFSVHKADVG QDGPRPGERL  300
PAEGEDLSWL RYLEDELGLE ATKERGDQDN SRTSSITTGP SEIKAWGQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C5e-27161184105C-Myb DNA-Binding Domain
1msf_C5e-27161184105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00249DAPTransfer from AT1G79180Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010064066.11e-133PREDICTED: myb-related protein Myb4
TrEMBLA0A1U8L0C23e-98A0A1U8L0C2_GOSHI; protein ODORANT1-like
STRINGXP_010064066.11e-132(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.12e-81myb domain protein 63