PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC051672.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Dof

Protein Properties

Length: 363aa MW: 37941 Da PI: 9.4909

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC051672.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.7	6.2e-39	79	138	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprCds ntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+ EcC051672.20 79 EAALKCPRCDSINTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 138 7789*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-31	62	127	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.2E-33	81	136	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.562	82	136	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	84	120	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MVFSSLPTYL DPSNWQQQQN HHHHQAGNSG LNNQLPPAPP PPPPPPPQPH GGAGGNPGCS 60 IRPGSMVERA RLANIPMPEA ALKCPRCDSI NTKFCYFNNY SLSQPRHFCK TCRRYWTRGG 120 ALRNVPVGGG CRRNKRSKGS SSKSPITSGS SDQQASGGSV SSITSRGSSG LAGDILNRAT 180 AQIPGLRYMS PSSLNNLGEL GNSGEMGLNY AGIPGSMVGD AGNLSFQLGG NSSLLSMGSL 240 EHQWRLQQVT QQFPFMSSLD KHANLYSMDA STSGVEPSGL AGHHQVRPNL FMNSGASHTS 300 SVKVENINQD QLNLSRQLMG NSGANDQFWS VGGGSGGGGV GGGGGSAWTD LSGFSSSSTS 360 SAL

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MVFSSLPTYL DPSNWQQQQN HHHHQAGNSG LNNQLPPAPP PPPPPPPQPH GGAGGNPGCS  60
IRPGSMVERA RLANIPMPEA ALKCPRCDSI NTKFCYFNNY SLSQPRHFCK TCRRYWTRGG  120
ALRNVPVGGG CRRNKRSKGS SSKSPITSGS SDQQASGGSV SSITSRGSSG LAGDILNRAT  180
AQIPGLRYMS PSSLNNLGEL GNSGEMGLNY AGIPGSMVGD AGNLSFQLGG NSSLLSMGSL  240
EHQWRLQQVT QQFPFMSSLD KHANLYSMDA STSGVEPSGL AGHHQVRPNL FMNSGASHTS  300
SVKVENINQD QLNLSRQLMG NSGANDQFWS VGGGSGGGGV GGGGGSAWTD LSGFSSSSTS  360
SAL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00295	DAP	Transfer from AT2G37590	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010037844.1	0.0	PREDICTED: dof zinc finger protein DOF2.4
TrEMBL	A0A059A710	0.0	A0A059A710_EUCGR; Uncharacterized protein
STRING	XP_010037844.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1713	28	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	2e-39	Dof family protein