PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC051631.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

TALE

Protein Properties

Length: 409aa MW: 45198.5 Da PI: 5.9378

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC051631.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	19	2.5e-06	360	387	28	55
HHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 28 eereeLAkklgLterqVkvWFqNrRake 55 +++ LA+ +gL+++q+ +WF N+R ++ EcC051631.10 360 ADKLALAEATGLDQKQINNWFINQRKRH 387 66778*******************9885 PP
2	ELK	36.6	9.3e-13	279	300	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK+ LlrKYsgy+g Lk+EFs EcC051631.10 279 ELKDKLLRKYSGYIGALKHEFS 300 9********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	1.7E-21	135	179	IPR005540	KNOX1
Pfam	PF03790	4.8E-21	136	178	IPR005540	KNOX1
SMART	SM01256	1.3E-20	187	238	IPR005541	KNOX2
Pfam	PF03791	1.2E-20	192	237	IPR005541	KNOX2
SMART	SM01188	1.9E-7	279	300	IPR005539	ELK domain
Pfam	PF03789	7.6E-10	279	300	IPR005539	ELK domain
PROSITE profile	PS51213	10.633	279	299	IPR005539	ELK domain
SMART	SM00389	8.8E-4	301	394	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.8E-24	304	391	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.72E-9	358	397	IPR009057	Homeodomain-like
CDD	cd00086	7.76E-8	359	390	No hit	No description
Pfam	PF05920	1.4E-9	359	386	IPR008422	Homeobox KN domain
PROSITE profile	PS50071	9.718	361	390	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	365	388	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MEERPIKVCS YLIANETVNF PADARHKGAH PPRPRSRCIF YIYRTTDTGA AHELFAPLIY 60 AYINGRAVRT AHFHGGSTGG PAGFSGRNAT SYHLSGSDHQ LAPGSSAVSD AGSSMVVVAD 120 GEGEEGEEDD GDVSTTLRAK IATHPLYPKL LEAYVDCHKV GAPPEVAGLL DEIRRQSDDI 180 SMVTGSVTDC RGLDPELDEF MGTYYSMLVK YKSDLSKPFE EATSFLNTMR DQLNTLCHGS 240 SSSTNYLHVT EDCAGSSEED LSGGEIDVLE GSQSSEDREL KDKLLRKYSG YIGALKHEFS 300 KKKKKGKLPR EARQLLLDWW SIHYNWPYPT VKHLHSIHTG LVDVGGELIA LGVPQCVQEA 360 DKLALAEATG LDQKQINNWF INQRKRHWKQ DENTQPGIME SLYGPFFAN

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MEERPIKVCS YLIANETVNF PADARHKGAH PPRPRSRCIF YIYRTTDTGA AHELFAPLIY  60
AYINGRAVRT AHFHGGSTGG PAGFSGRNAT SYHLSGSDHQ LAPGSSAVSD AGSSMVVVAD  120
GEGEEGEEDD GDVSTTLRAK IATHPLYPKL LEAYVDCHKV GAPPEVAGLL DEIRRQSDDI  180
SMVTGSVTDC RGLDPELDEF MGTYYSMLVK YKSDLSKPFE EATSFLNTMR DQLNTLCHGS  240
SSSTNYLHVT EDCAGSSEED LSGGEIDVLE GSQSSEDREL KDKLLRKYSG YIGALKHEFS  300
KKKKKGKLPR EARQLLLDWW SIHYNWPYPT VKHLHSIHTG LVDVGGELIA LGVPQCVQEA  360
DKLALAEATG LDQKQINNWF INQRKRHWKQ DENTQPGIME SLYGPFFAN

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269\|PubMed:16798887}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269\|PubMed:11311158, ECO:0000269\|PubMed:16798887}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002282076.1	1e-115	PREDICTED: homeobox protein knotted-1-like 6
Swissprot	Q84JS6	9e-95	KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBL	D7SHP3	1e-114	D7SHP3_VITVI; Uncharacterized protein
STRING	VIT_17s0000g08710.t01	1e-114	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23380.1	4e-94	KNOTTED1-like homeobox gene 6

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Khan M, et al. Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis. Plant Physiol., 2015. 169(3): p. 2166-86 [PMID:26417006]