PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC051253.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 390aa    MW: 43791.9 Da    PI: 5.7764
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC051253.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.91.7e-52151421128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 
                   + pGfrFhPtdeelv +yLk+k+++++l++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ +
  EcC051253.10  15 MLPGFRFHPTDEELVGFYLKRKIQQRPLSI-ELIRQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSdG 110
                   579***************************.89***************8888999***************************************966 PP

           NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                   ++ +glkk+Lvfy+gra kg+ktdW+mhe+rl
  EcC051253.10 111 SKCIGLKKSLVFYQGRAAKGVKTDWMMHEFRL 142
                   677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.98E-5914167IPR003441NAC domain
PROSITE profilePS5100557.40615167IPR003441NAC domain
PfamPF023651.4E-2517142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006412Biological Processtranslation
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0005840Cellular Componentribosome
GO:0003677Molecular FunctionDNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MEESVDCEKS MDEVMLPGFR FHPTDEELVG FYLKRKIQQR PLSIELIRQL DIYKYDPWDL  60
PKLATTGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSDG SKCIGLKKSL  120
VFYQGRAAKG VKTDWMMHEF RLPSLTDLSS QNIPAHDSWA ICRIFKKTNS TSHRSLAHSY  180
VSTMLPSETT ASETANSLFH SQLSPDTPSF SPSPTKTSSS VHIPPHNITP VFDSSSPVPW  240
TNLDFAIISS NLDLNPNHFL FPPLQETTAS DVSSILQHMS SSMFGDVGRS FESDLNDHQE  300
QFNDGFPLLT LPLEMQVNGA VVGGSGGEEA SSLLPRNPSR DEPWEAVRFG GSPYGSDNYL  360
NVGDAWKSNL GWDAMSDLST YYYPTTKCFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-541717322174NAC domain-containing protein 19
3swm_B3e-541717322174NAC domain-containing protein 19
3swm_C3e-541717322174NAC domain-containing protein 19
3swm_D3e-541717322174NAC domain-containing protein 19
3swp_A3e-541717322174NAC domain-containing protein 19
3swp_B3e-541717322174NAC domain-containing protein 19
3swp_C3e-541717322174NAC domain-containing protein 19
3swp_D3e-541717322174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010066915.20.0PREDICTED: putative NAC domain-containing protein 94
SwissprotQ9ZVH01e-101FEZ_ARATH; Protein FEZ
TrEMBLA0A059BFU90.0A0A059BFU9_EUCGR; Uncharacterized protein
STRINGXP_010066915.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-103NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]