PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC050846.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 300aa    MW: 32839 Da    PI: 7.3834
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC050846.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.31.3e-13105156155
                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +r++h ++Er+RR+++N+ ++ Lr+++P++   + ++ + a+i   A++++k+L+
  EcC050846.20 105 QRMTHIAVERNRRKQMNDYLAVLRSMMPPS---YVQRGDQASIIAGAINFVKELE 156
                   79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.61E-14103160No hitNo description
PROSITE profilePS5088815.212104155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-16104171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-11105156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-14105167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-10110161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MALETVVFQQ DPFSCYGGGA WNHHVGSGCF GDDEKTTRVH EAAALNLNAA EAAMNVDRDG  60
GWDVEGGLAG VGASPPPAAP PGTVSGRRKR RRMRIVKNRD EVESQRMTHI AVERNRRKQM  120
NDYLAVLRSM MPPSYVQRGD QASIIAGAIN FVKELEQHLQ SLKSQKQPAQ VNGPRSASPA  180
DDHPFSDFFT FPQYSTRASS SHGPEARSAV ADVEVTLVDS HANVKVLSRN QPKQLLKMVH  240
GLHSLRLNVL HLTLTTVQNM VLYSFSVKVE DSSQLTSVNE IATAVYEMVG SIQEEAAFVC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18791RKRRR
2105116RMTHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010025414.10.0PREDICTED: transcription factor bHLH96
SwissprotQ9C7T44e-78BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A059B7G50.0A0A059B7G5_EUCGR; Uncharacterized protein
STRINGXP_010025414.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.16e-77bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]