PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC050755.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ARR-B
Protein Properties Length: 246aa    MW: 27432.6 Da    PI: 6.9408
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC050755.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.43.7e-24198246251
       G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                   +r+ W+peLH +Fv+av+qL G++ A Pk+ile+m+v+gLt+e+v+SHLQ
  EcC050755.20 198 TRVSWSPELHLKFVNAVQQL-GINSAYPKQILEIMNVQGLTRENVASHLQ 246
                   79******************.****************************9 PP
2Response_reg585.5e-20301381109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   v+ +d +++ +++l++al+k +y ev++ ++++eale+l+ ++  +D++++     +mdG++l++ i  e  ++p+++v+a+++++ + +a+  Ga+
  EcC050755.20  30 VMAIDGDRACLKILATALKKCQY-EVTAQEKATEALETLRGEKdkYDIVITATVGLDMDGFNLVEVIGLEL-DIPVVMVSASDDQKIVMKAILHGAR 124
                   788999*****************.***************555556*******9999***********5544.6************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   dfl+Kp+ ++el +
  EcC050755.20 125 DFLMKPVRIQELKN 138
                   ***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23003.4E-3026161No hitNo description
SuperFamilySSF521729.39E-2626156IPR011006CheY-like superfamily
SMARTSM004482.5E-1328140IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011028.16429144IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.9E-1530138IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.23E-1533144No hitNo description
PROSITE profilePS5129412.613194246IPR017930Myb domain
SuperFamilySSF466891.58E-14195246IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-23195246IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-21198246IPR006447Myb domain, plants
PfamPF002494.1E-6199246IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0010411Biological Processxyloglucan metabolic process
GO:0042546Biological Processcell wall biogenesis
GO:0005618Cellular Componentcell wall
GO:0005794Cellular ComponentGolgi apparatus
GO:0048046Cellular Componentapoplast
GO:0003677Molecular FunctionDNA binding
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016762Molecular Functionxyloglucan:xyloglucosyl transferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
GQDMLKIGEK GTRLAPEEAD GVPYSEGLRV MAIDGDRACL KILATALKKC QYEVTAQEKA  60
TEALETLRGE KDKYDIVITA TVGLDMDGFN LVEVIGLELD IPVVMVSASD DQKIVMKAIL  120
HGARDFLMKP VRIQELKNIW QHVLRKQLRK QEKSRLAVEK TAPQATGMKR PVLTDEEANA  180
KDESNCQADD NASVRKRTRV SWSPELHLKF VNAVQQLGIN SAYPKQILEI MNVQGLTREN  240
VASHLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A3e-16197246150Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010050237.11e-171PREDICTED: two-component response regulator ARR12-like
SwissprotQ5SML52e-67ORR22_ORYSJ; Two-component response regulator ORR22
TrEMBLA0A2N9II984e-73A0A2N9II98_FAGSY; Uncharacterized protein
STRINGXP_010050237.11e-171(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.12e-67response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]