PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC050734.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

M-type_MADS

Protein Properties

Length: 82aa MW: 9141.58 Da PI: 10.8325

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC050734.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	50.9	2e-16	13	49	5	41
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 n + r + + kR+ng++KKA E SvLC+++ +v++f EcC050734.20 13 NARARRIAYEKRKNGLMKKAREFSVLCGVDTCVVVFP 49 78899******************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	1.57E-17	1	80	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.2E-11	1	66	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	17.058	1	48	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.43E-17	2	80	No hit	No description
PRINTS	PR00404	3.7E-9	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.0E-16	13	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.7E-9	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.7E-9	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 82 aa Download sequence Send to blast
MGRGRTPHGL VPNARARRIA YEKRKNGLMK KAREFSVLCG VDTCVVVFPE AAASVDRPIA 60 PEVWPPDHGE ARRIIERYRS AG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010026643.1	6e-52	PREDICTED: MADS-box transcription factor 4
TrEMBL	A0A059B0J0	1e-50	A0A059B0J0_EUCGR; Uncharacterized protein
STRING	XP_010026643.1	2e-51	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	9e-20	M-type_MADS family protein