PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC050707.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | Dof | ||||||||
Protein Properties | Length: 282aa MW: 30695.1 Da PI: 8.1476 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 128.2 | 2.4e-40 | 18 | 79 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e+alkcprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++sss EcC050707.10 18 PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNRRSSS 79 7899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-30 | 16 | 76 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 8.8E-34 | 20 | 76 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.581 | 22 | 76 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 24 | 60 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MLVCTKPQQD NKKPRPQPEQ ALKCPRCDST NTKFCYYNNY SLSQPRYFCK SCRRYWTKGG 60 TLRNVPVGGG CRKNRRSSSS SSSSSKRAQD QQLLTSSANS VLNGLPGLST FDSSDLTLAF 120 ARLQKQASGQ FGLDDHDLPI LGKPNIHPSD VLGNHGGFLD SLRHGFIENH QGNFQNFYYG 180 HGGANAGDLM ENGCSAGEMG LGYDQEMSGP QTTAAVTMTT MKQELCSGGE GENRILWGFP 240 WQLNANYADG GNMMGDLDSA RGSGWSNGLS SPWHGLLNSP LM |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010032040.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.3 | ||||
TrEMBL | A0A059ABJ3 | 0.0 | A0A059ABJ3_EUCGR; Uncharacterized protein | ||||
STRING | XP_010032040.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6960 | 27 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28510.1 | 5e-45 | Dof family protein |