PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC050706.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Protein Properties

Length: 155aa MW: 17758.9 Da PI: 6.0011

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC050706.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	100	1.4e-31	72	155	1	83
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k ltpsdv+k++rlv+pk++ae+h e +++l++edesg+ W+++++y+ +s++yvltkGW++Fvk+++L++gD+v+F+ EcC050706.10 72 FEKPLTPSDVGKLNRLVIPKQHAEKHfplV--GEATQQLSFEDESGKWWRFRYSYWSSSQSYVLTKGWSRFVKDKRLDAGDVVLFH 155 99***********************653..455668*********************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.0E-38	64	154	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.57E-30	68	155	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.02E-23	70	155	No hit	No description
SMART	SM01019	1.9E-14	72	155	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	15.636	72	155	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.4E-29	72	155	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006508	Biological Process	proteolysis
GO:0003677	Molecular Function	DNA binding
GO:0008236	Molecular Function	serine-type peptidase activity

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MSLNHPLSTS DGTPNTLWWT THPAMFRQPN LLLNFNPTDD DPQDEGSPPP PYVLREAPPP 60 AEPSPAEKEP MFEKPLTPSD VGKLNRLVIP KQHAEKHFPL VGEATQQLSF EDESGKWWRF 120 RYSYWSSSQS YVLTKGWSRF VKDKRLDAGD VVLFH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	2e-41	66	155	2	94	B3 domain-containing transcription factor NGA1
5os9_B	2e-41	66	155	2	94	B3 domain-containing transcription factor NGA1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010059417.1	1e-108	PREDICTED: B3 domain-containing protein At2g36080
Swissprot	Q8GYJ2	2e-42	Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBL	A0A059DJE9	1e-107	A0A059DJE9_EUCGR; Uncharacterized protein
STRING	XP_010059417.1	1e-107	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1220	28	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36080.2	2e-34	B3 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Tanaka M, et al. The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation. Plant Cell, 2016. 28(11): p. 2830-2849 [PMID:27760805]