PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC050666.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 501aa    MW: 56902.9 Da    PI: 8.9519
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC050666.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.31e-16991781597
                   -EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
            B3  15 rlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                    l +p kf++++  g+   ++++tl + sgrsWevkl   ++++    +l++GW+ Fv++ +L+ gD +vF+l++r++  +++++f
  EcC050666.10  99 KLNIPWKFMKTYiRGD---PRMVTLVN-SGRSWEVKL--HGYKRFqiAFLAAGWSAFVREARLRIGDACVFELIDRDNIVFRISIF 178
                   389*********8555...34677776.*********..555555559**************************987776677766 PP
2B344.92.1e-14210301299
                   EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
            B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                   fk+   sd+l+sg l +pkkf+ ++g++   s  + l+ + +  W + +  +k+++  ++l kGW+eF +   +  g  +vFk++g+s+f  +v++f
  EcC050666.10 210 FKII-LSDTLESGKLGIPKKFLGRYGKD--LSSLVLLKVLGSSPWPIGV--EKCKDDeVWLWKGWREFMQHYSIGHGHLIVFKYKGSSTF--RVMIF 299
                   4444.59******************977..777899999**********..8877777***************************98998..99999 PP

                   -S CS
            B3  98 rk 99 
                   +k
  EcC050666.10 300 NK 301
                   87 PP
3B3543e-17405500199
                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                   ffkv ++++++k+   ++p++f+ +h ++    k+++    sgrsW vkl  + ++ +     +++GW  Fv+  +L +g ++vF+l++r++  ++v
  EcC050666.10 405 FFKVVMRPSYMKKE-AYVPRRFIIQHILE--I-KEIVTLRHSGRSWPVKL--WSNPHSvhgAAFSSGWGAFVRGTRLHVGNVCVFELIDRDDVVFRV 495
                   78888888888877.799********444..2.35777778*********..777777669999************************999998999 PP

                   EEE-S CS
            B3  95 kvfrk 99 
                    +f++
  EcC050666.10 496 YIFSS 500
                   99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.321143IPR003340B3 DNA binding domain
SuperFamilySSF1019361.94E-8343IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-8343IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.0E-2278178IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-2180178IPR015300DNA-binding pseudobarrel domain
CDDcd100174.80E-1685179No hitNo description
SMARTSM010197.2E-1487181IPR003340B3 DNA binding domain
PfamPF023626.9E-1493179IPR003340B3 DNA binding domain
PROSITE profilePS5086312.675100181IPR003340B3 DNA binding domain
SuperFamilySSF1019368.24E-20205302IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.5E-20205302IPR015300DNA-binding pseudobarrel domain
CDDcd100172.94E-10207300No hitNo description
PROSITE profilePS5086312.238208302IPR003340B3 DNA binding domain
SMARTSM010191.4E-10209302IPR003340B3 DNA binding domain
PfamPF023621.1E-11210301IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-21397500IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-20399499IPR015300DNA-binding pseudobarrel domain
CDDcd100171.43E-16404499No hitNo description
PROSITE profilePS5086311.42404501IPR003340B3 DNA binding domain
PfamPF023621.8E-15405500IPR003340B3 DNA binding domain
SMARTSM010191.2E-10406501IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MAFLTSGWPS FTRETGLHLG DVCVFELIDR DDIVFRVSIF SSDGRIEIQQ SQFRERSSEP  60
AFHGSPCPSP VTAHEKASKF ESEYPFFHVV ILPNHIYTKL NIPWKFMKTY IRGDPRMVTL  120
VNSGRSWEVK LHGYKRFQIA FLAAGWSAFV REARLRIGDA CVFELIDRDN IVFRISIFSG  180
MARRRRRPGE DGGVDPDAAA GPRLESPHFF KIILSDTLES GKLGIPKKFL GRYGKDLSSL  240
VLLKVLGSSP WPIGVEKCKD DEVWLWKGWR EFMQHYSIGH GHLIVFKYKG SSTFRVMIFN  300
KSSSEIDYSS SSISNLGSGF ISPEWEDVIE MEDSEDSTSH QKMRVEPHSP CSQLSPSCSS  360
QDLEDGAGQS RSRASHSKPV SGGSMSPWPL SSFELASKFD SEYPFFKVVM RPSYMKKEAY  420
VPRRFIIQHI LEIKEIVTLR HSGRSWPVKL WSNPHSVHGA AFSSGWGAFV RGTRLHVGNV  480
CVFELIDRDD VVFRVYIFSS K
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010068262.10.0PREDICTED: B3 domain-containing transcription factor VRN1
TrEMBLA0A059BC571e-147A0A059BC57_EUCGR; Uncharacterized protein
STRINGXP_010068262.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3457922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-15B3 family protein