PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC050662.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | YABBY | ||||||||
Protein Properties | Length: 214aa MW: 24288.5 Da PI: 6.1607 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 196.2 | 1.4e-60 | 7 | 165 | 3 | 169 |
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesasts 95 + s seq+CyvqC+fC+t+l+vsvP +sl++vvtvrCGhCt+llsvn++kas +lla sh ++ +++++e+++++nve ++ + EcC050662.20 7 LLSLSEQICYVQCGFCTTVLLVSVPCSSLSSVVTVRCGHCTTLLSVNMMKASfvplHLLAPLSH---DGP-----KEEFQEMEVQKNVELYS--PSF 93 6789********************************************9998433333333333...222.....22233333333333333..333 PP YABBY 96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 v+s++++++e+ ++r v++PPekrqr Psaynrfikeei+r+ka+nP+i h+eafs aaknWa fP+ f+ EcC050662.20 94 VNSSEVEDEETIAITR--VVNKPPEKRQRTPSAYNRFIKEEIRRLKAQNPNIPHKEAFSQAAKNWAQFPQHQFK 165 3333444555555554..699************************************************98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.1E-62 | 10 | 164 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.7E-9 | 109 | 162 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 7.2E-7 | 112 | 163 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006412 | Biological Process | translation | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005840 | Cellular Component | ribosome | ||||
GO:0003735 | Molecular Function | structural constituent of ribosome | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MATIDHLLSL SEQICYVQCG FCTTVLLVSV PCSSLSSVVT VRCGHCTTLL SVNMMKASFV 60 PLHLLAPLSH DGPKEEFQEM EVQKNVELYS PSFVNSSEVE DEETIAITRV VNKPPEKRQR 120 TPSAYNRFIK EEIRRLKAQN PNIPHKEAFS QAAKNWAQFP QHQFKGDNGE SIVQEVEREK 180 SISDDSVEVS GEGNGFRERK VARHFIWEKT PFDY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018720233.1 | 1e-136 | PREDICTED: axial regulator YABBY 4 | ||||
Swissprot | Q9LDT3 | 4e-70 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A059D8Z4 | 1e-135 | A0A059D8Z4_EUCGR; Uncharacterized protein (Fragment) | ||||
STRING | XP_010046639.1 | 1e-159 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8044 | 27 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 3e-59 | YABBY family protein |
Publications ? help Back to Top | |||
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