PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC050485.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | LBD | ||||||||
Protein Properties | Length: 156aa MW: 18055.4 Da PI: 8.3829 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 102.9 | 2.9e-32 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 aCa+C+++r++C +C +a+ fpa++ +f+ +++lFG++n++++++a+++e r++a++s+++e+++r +dPv+G++gv ++l+++++ +++l+ + EcC050485.10 7 ACASCRHQRKRCDGNCQYAELFPASRYDEFQDAQRLFGVNNMHNIVNAVEPEFRKQAAESILMEGNIRRSDPVHGCLGVARRLKWEIDLCQKQLEDT 103 7********************************************************************************************9988 PP DUF260 98 kee 100 +++ EcC050485.10 104 NRH 106 765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.240.10 | 1.3E-4 | 4 | 21 | IPR001138 | Zn(2)-C6 fungal-type DNA-binding domain |
PROSITE profile | PS50891 | 22.073 | 6 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-29 | 7 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009690 | Biological Process | cytokinin metabolic process | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0019139 | Molecular Function | cytokinin dehydrogenase activity | ||||
GO:0050660 | Molecular Function | flavin adenine dinucleotide binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MPAASKACAS CRHQRKRCDG NCQYAELFPA SRYDEFQDAQ RLFGVNNMHN IVNAVEPEFR 60 KQAAESILME GNIRRSDPVH GCLGVARRLK WEIDLCQKQL EDTNRHLSFL QQRDRELQRQ 120 RQGFNDTLVE LPPLLPAFFS NGGGVRSFYE QMQRNP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-17 | 1 | 107 | 5 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-17 | 1 | 107 | 5 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010050454.1 | 1e-114 | PREDICTED: LOB domain-containing protein 33-like | ||||
TrEMBL | A0A067E2B9 | 1e-42 | A0A067E2B9_CITSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_010050454.1 | 1e-113 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 1e-22 | LOB domain-containing protein 22 |