PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC050476.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 302aa    MW: 33228 Da    PI: 6.4119
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC050476.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.3e-1962110355
           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  EcC050476.10  62 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 110
                   9*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.03E-2261119IPR016177DNA-binding domain
SMARTSM003801.1E-3761124IPR001471AP2/ERF domain
PROSITE profilePS5103223.77561118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-3261119IPR001471AP2/ERF domain
PRINTSPR003677.7E-126273IPR001471AP2/ERF domain
CDDcd000181.01E-3062119No hitNo description
PfamPF008476.1E-1262110IPR001471AP2/ERF domain
PRINTSPR003677.7E-1284100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MCGGAIIADF IPRNRRRVLL CSFVFLRSIL DENSSGVLSG EFRRTGGAQE EKAPKKPRKN  60
LYRGIRQRPW GKWAAEIRDP RKGVRVWLGT FNTAEEAARA YDREARKIRG KKAKVNFPNE  120
DDAFSTIPRA HQTQHHHPQV PDYPTLYQPN WNNNGAPAKT LDLAFAYDLN QTGHFPANGY  180
APIHAEPVAI SSEEISGSGS EDTHASSTTA LLGANYGAAE AKVKAEGEVG KKKEEDEESE  240
VQKLSEELLA FENYMKFYQI PYLDGQSAAA PPNPAQDSVV GELWAFDDDN ASGVTAVAPA  300
AL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-21621271581Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010069891.11e-163PREDICTED: ethylene-responsive transcription factor ERF071
TrEMBLA0A059AXD11e-162A0A059AXD1_EUCGR; Uncharacterized protein
STRINGXP_010069891.11e-163(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.17e-33ERF family protein