PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC050396.60
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 639aa    MW: 69688 Da    PI: 7.0097
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC050396.60genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.29.7e-30288347159
                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+aed +++++tYeg+H h+
  EcC050396.60 288 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQVQRCAEDMSILITTYEGTHSHP 347
                   58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-31273349IPR003657WRKY domain
SuperFamilySSF1182905.36E-27281349IPR003657WRKY domain
PROSITE profilePS5081128.093283349IPR003657WRKY domain
SMARTSM007741.2E-35288348IPR003657WRKY domain
PfamPF031062.3E-26289347IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0015979Biological Processphotosynthesis
GO:0055114Biological Processoxidation-reduction process
GO:0009522Cellular Componentphotosystem I
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0016620Molecular Functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MKAEAMMAME EQRAEPDSAG GRYGGMSSVV KHDEELRRAS HAFTVDDRSR IHAAEDREKN  60
QQRNDNPNRS SPEQKITSAS EQDQDPLKSA RTEMGEVREE NQRLKTYLDR IMKDYKTLQM  120
QFFDIVKPDQ EQQKPSEDEA MTNGNDDKQR AEESEELVSL SLGRSPSSQH SEKDDEKNKS  180
PISPRPGKLL FLENISKEQH LDLSLDCKLS DASTTGLVET LPKNNNDNSK GSPATSFEDH  240
QKEEATETWP PNKVLKTMRS GGDDEVSQQN PVKKARVSVR ARCDAATMND GCQWRKYGQK  300
IAKGNPCPRA YYRCTVAPSC PVRKQVQRCA EDMSILITTY EGTHSHPLPM SATAMASTTS  360
AAAAMLLSGS SSSQPGQSHG TSTTIGAGLH GLNFCLPDAS RSNQFYLPSS VMPSAPAHPT  420
ITLDLTSSNL SSASSTSSHF NRFSSHTFPS ATSRYSSTSL SFSSPDQSDN NLPMSWANNG  480
LLNYATQLQN KNHTAYQPYL QMKNNPSLPQ QSLPDNIAAA TKAITADPNF QSALAVALKS  540
IIGNGSSGAV PATIGDHSHG VGEQHSFGHK LRWSTEPFST ASSLLPQALQ ANGCSSSFLN  600
RSSLSSQLGS FVIPPPSLPF SLSKRPASPN DNRDRTNLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-20275349174WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010029113.10.0PREDICTED: probable WRKY transcription factor 61
TrEMBLA0A059CYI90.0A0A059CYI9_EUCGR; Uncharacterized protein
STRINGXP_010029113.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29592868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.11e-67WRKY DNA-binding protein 72