PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC050352.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | LBD | ||||||||
Protein Properties | Length: 235aa MW: 24788.1 Da PI: 7.6169 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 91 | 1.4e-28 | 2 | 101 | 1 | 95 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C++C+vlr++C+++Cvl+ ++ p++q +++ +++++FG+s +l+l++a+p+++r+++++sl++eA+ r+ +Pv Gavg++++++++++++++ EcC050352.10 2 SCNGCRVLRKGCSESCVLRSCLrwipsPEAQGNATLFLARFFGRSDLLSLVAAVPDSQRPALFQSLLFEACGRTVNPVGGAVGLLSSGNWHVCEAAV 98 6************************999999****************************************************************99 PP DUF260 93 ela 95 e++ EcC050352.10 99 ETV 101 976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.285 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.8E-24 | 2 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006807 | Biological Process | nitrogen compound metabolic process | ||||
GO:0060776 | Biological Process | simple leaf morphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MSCNGCRVLR KGCSESCVLR SCLRWIPSPE AQGNATLFLA RFFGRSDLLS LVAAVPDSQR 60 PALFQSLLFE ACGRTVNPVG GAVGLLSSGN WHVCEAAVET VLDGGVVQAL CGGAATLAFG 120 LDQSADSPFF SPSTCRGQSL QQSLQVPASI QVDVNLALPL YDPDLSFKEK LPGKRRGKRS 180 QVTNNWPTRT TTTTTAAATT RLSSEASEVI DPPSGYDHGG VGPGGQETKL LNLFV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010059846.1 | 1e-168 | PREDICTED: LOB domain-containing protein 37 | ||||
TrEMBL | A0A059BK71 | 1e-167 | A0A059BK71_EUCGR; Uncharacterized protein | ||||
STRING | XP_010059846.1 | 1e-168 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM821 | 28 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 2e-56 | LOB domain-containing protein 38 |