PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC050177.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 555aa    MW: 60693.7 Da    PI: 6.5117
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC050177.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS242.41.8e-741735492374
          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                   ++lL  cA a+++++l+++q+lL  l+elasp+gdp++Rla++ ++AL  +l+ s ++l ++ +p + s+ +     ++l  f+e sP++ f   + 
  EcC050177.10 173 EQLLNPCAAAITANNLTRVQHLLYVLHELASPTGDPNHRLASHGLRALTYHLSPS-TSLPSS-APFTFSSAEPRFFQKSLLRFNESSPWFAFPSNIV 267
                   689**************************************************93.333333.3333333344444455555*************** PP

          GRAS  99 NqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg........skeeleetgerLakfAeelgvpfefnvlv 182
                   N+ Il+ ++ e    + +Hi+D+++s+G+QWp+Ll+ L+ Rp ++pp +R+T++++  +g         +   + +   L  fA++l++++e+n   
  EcC050177.10 268 NSSILQVLSDEpdksRNLHIVDIGVSHGAQWPTLLDNLSRRPgGPPPLVRLTVISPTGEGgnaeipfsMAPPGHDVSPLLLGFAKTLNINLEINRPD 364
                   ********9998887899************************55566*********8777999998887888999*******************955 PP

          GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh...nsesFlerflealeyysalfdsleaklp 276
                      l++l++++++++p+E+l+V+ +++lh+l       +s r+e+Lk v+ lsPk ++++e++ ++   +  +F+++f++ +ey + ++ds++a + 
  EcC050177.10 365 KLPLQSLNPQSINTSPDETLIVSAQFRLHYLS------HSDRTEFLKSVRALSPKGMILTENNENCacaGCVDFATGFSRRIEYLWRFLDSTSAAF- 454
                   559****************************8......455789*****************99665325666********************8886. PP

          GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee..sgslv.lgWkdrpLvs 369
                      + r + Er+l++ e+  +++   ++    +e  e+W er++eaGF+   l+e+a +  ++llrk++ +++++vee+  s++ v lgWk++p+ +
  EcC050177.10 455 ---KGRETEERRLMEGEAARALTSTAEM----NEGRERWCERMREAGFTGEGLGEDAIDGGRALLRKHDgNWEMKVEEDggSHCCVsLGWKGQPVSF 544
                   ...8888889999999999999888877....899999*******************************9999*****966555557********** PP

          GRAS 370 vSaWr 374
                   +S W+
  EcC050177.10 545 CSLWK 549
                   ****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.708146525IPR005202Transcription factor GRAS
PfamPF035146.4E-72173549IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MTIEEAEPNP HVLGWIEDSV SLFPSFLDDP YDPAEINGYN WWDPNQDFAH DLINTSSASI  60
ASTVTTADSN THSDTTAVTT HTATDPTAAA TTNHSEESVK QETSKKRKAS LGNQDHTRRR  120
NRSVSTIENP GSFDVKAAKP VLGGVKRPSS KKRPAMSSGN NSNGGNKEGR WAEQLLNPCA  180
AAITANNLTR VQHLLYVLHE LASPTGDPNH RLASHGLRAL TYHLSPSTSL PSSAPFTFSS  240
AEPRFFQKSL LRFNESSPWF AFPSNIVNSS ILQVLSDEPD KSRNLHIVDI GVSHGAQWPT  300
LLDNLSRRPG GPPPLVRLTV ISPTGEGGNA EIPFSMAPPG HDVSPLLLGF AKTLNINLEI  360
NRPDKLPLQS LNPQSINTSP DETLIVSAQF RLHYLSHSDR TEFLKSVRAL SPKGMILTEN  420
NENCACAGCV DFATGFSRRI EYLWRFLDST SAAFKGRETE ERRLMEGEAA RALTSTAEMN  480
EGRERWCERM REAGFTGEGL GEDAIDGGRA LLRKHDGNWE MKVEEDGGSH CCVSLGWKGQ  540
PVSFCSLWKL SGGGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B4e-3516954984473Protein SHORT-ROOT
5b3h_B2e-3516954930419Protein SHORT-ROOT
5b3h_E2e-3516954930419Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010033735.10.0PREDICTED: nodulation-signaling pathway 1 protein
SwissprotQ4VYC80.0NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLA0A059AIQ30.0A0A059AIQ3_EUCGR; Uncharacterized protein
STRINGXP_010033735.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107472834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-139GRAS family protein
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]