PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC050085.20
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 148aa    MW: 15637.3 Da    PI: 5.3806
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC050085.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.58.9e-202272255
           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                  +y+GVr+++ +g+++AeIrd +    + +r++lg+f t eeAa+a+++a+++l+g
  EcC050085.20 22 KYRGVRRRP-WGKYAAEIRDSTR---QgARVWLGTFNTGEEAARAYDRAALALRG 72
                  8********.**********322...24*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.21E-282280No hitNo description
SMARTSM003804.6E-342286IPR001471AP2/ERF domain
PfamPF008477.8E-162272IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-312281IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-232281IPR016177DNA-binding domain
PROSITE profilePS5103223.7882280IPR001471AP2/ERF domain
PRINTSPR003673.0E-112334IPR001471AP2/ERF domain
PRINTSPR003673.0E-114662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MDEDPKGKAK EKMGGEGASE VKYRGVRRRP WGKYAAEIRD STRQGARVWL GTFNTGEEAA  60
RAYDRAALAL RGPLAILNFP GEYPSAIGGG GSSVATSPAT SSGSAPSTGL GRGGGDRPEQ  120
GREVFEIECL GDEVLEALLD FSDKSKDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-31151347114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010039174.11e-101PREDICTED: ethylene-responsive transcription factor ERF096
SwissprotQ9LTC53e-36ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A059D1V21e-100A0A059D1V2_EUCGR; Uncharacterized protein
STRINGXP_010039174.11e-101(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.14e-25ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]