PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC049950.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ARR-B
Protein Properties Length: 335aa    MW: 38003.1 Da    PI: 8.2343
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC049950.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like73.62.7e-23204257155
       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                   k+r++W+ +LH++Fv+av+q  G ++  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  EcC049950.40 204 KARVVWSVDLHQKFVRAVNQS-GYDEVDPKKILDLMNVPWLTRENVASHLQKYRL 257
                   68******************9.9*******************************8 PP
2Response_reg70.85.8e-24221301109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vd + + +++l+++l+k  y ev+++  +++al+ll e++  +D+++ D++mp+mdG++ll+     e++lp+i+++  ge + +++ ++ Ga 
  EcC049950.40  22 VLAVDGDSTWLKILEKMLKKFSY-EVTTCGLARDALKLLWERKggYDIVISDVNMPDMDGFKLLELVGL-EMDLPVIMMSVDGETSRVKKGVQHGAC 116
                   7899*******************.***************666667*******************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ ++el++
  EcC049950.40 117 DYLPKPIRMKELRN 130
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.0E-1321317IPR017053Response regulator B-type, plant
SuperFamilySSF521721.04E-3119140IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23006.7E-4019143No hitNo description
SMARTSM004488.2E-2620132IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011037.95821136IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.6E-2122131IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.60E-2823136No hitNo description
Gene3DG3DSA:1.10.10.603.2E-27202262IPR009057Homeodomain-like
SuperFamilySSF466893.67E-17202261IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-20204257IPR006447Myb domain, plants
PfamPF002491.4E-7206256IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MMESNKGFSP PRSNGFPAGL RVLAVDGDST WLKILEKMLK KFSYEVTTCG LARDALKLLW  60
ERKGGYDIVI SDVNMPDMDG FKLLELVGLE MDLPVIMMSV DGETSRVKKG VQHGACDYLP  120
KPIRMKELRN IWQHVFRKRI HGIRDIESHE GLEGLQVTKS GYDWLDDGHF YRGEDTSTPG  180
KKRKDLENKH DEKDLTDPSS STKKARVVWS VDLHQKFVRA VNQSGYDEVD PKKILDLMNV  240
PWLTRENVAS HLQKYRLYLS RLQKENDLNP QGTARASSHW NPINFQQTDP TNGNSRFSGD  300
NLLLQNLDSR GSEFHTRGTI ITETSGPGIS LSLST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-16200262163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018717352.10.0PREDICTED: two-component response regulator ORR26
SwissprotQ5N6V81e-122ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A059B7M70.0A0A059B7M7_EUCGR; Uncharacterized protein
STRINGXP_010025369.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-116response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]