PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC049901.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 487aa    MW: 54165.4 Da    PI: 5.8495
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC049901.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS334.12.6e-1021224802374
          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                    +lLlecA a+s ++l +a+++L +l ++asp+g +  +R++ayf++A+++r+ +s+ +++  lp  + +     ++ +a+++f  vsP+++f+h+t
  EcC049901.30 122 LTLLLECAVAISVDNLGEAHRMLLELTQMASPYGpSCAERIVAYFAKAMSSRVINSWLGIC--LPLVDYR-----SVHSAFQVFTTVSPFVRFAHFT 211
                   579*******************************9999*********************99..4555544.....4567999*************** PP

          GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle.lee 193
                    NqaIlea+++ +rvHi+D+di+qGlQWpaL++ La+R egpp++R+Tg+g+    s e l etg++L++fA++lg++fef+++v k+ e  + + +
  EcC049901.30 212 SNQAILEAFHRRDRVHIVDLDIMQGLQWPALFHILATRIEGPPHVRLTGMGA----SMELLVETGRQLTNFAKRLGMSFEFHPVVRKSGEIADlPYA 304
                   ****************************************************....9**************************98886665541678 PP

          GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                    ++++gE+laV++    h+l+d +++  +    +++l+ +l P+v+++veq++ h ++sFl+rf+ +l+yys+lfdsl a l +++  r+ vE+ ll
  EcC049901.30 305 VQLRQGETLAVHWLQ--HSLYDATGPDWK----TMRLLEELAPRVITLVEQDVLH-GGSFLDRFVGSLHYYSTLFDSLGACLLSDDPSRHQVEHGLL 394
                   9*************9..999999999888....*********************9.789************************************** PP

          GRAS 291 greivnvvacegaerrerhetlekWrerl.eeaG.Fkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   +rei n++a  g  r  +  ++++Wr+ l +++G F +vp+s + ++qa+l+l++++ ++gy++ + +g+l lgWkd +L+++SaW+
  EcC049901.30 395 HREINNILAIGGPGRSGED-KFRSWRSELlGRSGsFMQVPMSANSMAQAQLILNMFPpVQGYSLVQGDGTLRLGWKDTSLYTASAWT 480
                   **************77665.5****9876356666***************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.29595459IPR005202Transcription factor GRAS
PfamPF035149.1E-100122480IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MLEEGFEVVN RDLEMTPSLE LWDSSGFSDP ASGRCAGSER NELSDWVEQV TKQLIDDLPE  60
TPGGGADSEM ASEDCIPSIL SDLRPRKALR WNAIPHHLEG NSDSVHWGNE ASRSESNGLG  120
LLTLLLECAV AISVDNLGEA HRMLLELTQM ASPYGPSCAE RIVAYFAKAM SSRVINSWLG  180
ICLPLVDYRS VHSAFQVFTT VSPFVRFAHF TSNQAILEAF HRRDRVHIVD LDIMQGLQWP  240
ALFHILATRI EGPPHVRLTG MGASMELLVE TGRQLTNFAK RLGMSFEFHP VVRKSGEIAD  300
LPYAVQLRQG ETLAVHWLQH SLYDATGPDW KTMRLLEELA PRVITLVEQD VLHGGSFLDR  360
FVGSLHYYST LFDSLGACLL SDDPSRHQVE HGLLHREINN ILAIGGPGRS GEDKFRSWRS  420
ELLGRSGSFM QVPMSANSMA QAQLILNMFP PVQGYSLVQG DGTLRLGWKD TSLYTASAWT  480
SIAHHHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-13711348010378Protein SCARECROW
5b3h_D1e-13711348010378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010037969.10.0PREDICTED: protein SCARECROW-like
SwissprotQ2Z2E91e-135SCR_IPONI; Protein SCARECROW
TrEMBLA0A2C9UUM10.0A0A2C9UUM1_MANES; Uncharacterized protein
STRINGXP_010037969.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM160051115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-136GRAS family protein