PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC049893.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family SRS
Protein Properties Length: 395aa    MW: 41799.5 Da    PI: 8.1533
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC049893.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702191.14.1e-591403156154
        DUF702   6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...............aeaaskrkrel.kskkqsal 86 
                     C+dCGn+akk+C+++RCRtCCksrg+dC+thv+stWvpaa+rrerq ++      a                   +++  kr++    s+++ a+
  EcC049893.40 140 RVCKDCGNRAKKECSYRRCRTCCKSRGYDCSTHVRSTWVPAARRRERQMAMMGIGFGAGGGGggeggaagggggssgSSSGVKRPKLVdGSSNHGAT 236
                   57*********************************************9888777666655546788999****998777788888876567788999 PP

        DUF702  87 sstklssaeskkeletss...........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                   +++++s+a+++++++tss           lP +v+++avfrc+rv++++d+ +e+aYq++vsi+Ghvf+G+LydqGl+e
  EcC049893.40 237 NASSTSNATTPRSFDTSSchhqdasfkqsLPGQVRAPAVFRCIRVTAISDNAAEFAYQATVSISGHVFRGFLYDQGLDE 315
                   999**************9**********************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.6E-56141314IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.0E-26141183IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.3E-27266313IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0046488Biological Processphosphatidylinositol metabolic process
GO:0016307Molecular Functionphosphatidylinositol phosphate kinase activity
GO:0016491Molecular Functionoxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MAATHHFNYA SADHINMLGL RDVVFIGPPS SLHHQQPQQP PSVSDHHPHH PNFHLPSSTA  60
LGVGVSIFPL LTAAPYNVVE DCGNPNANNN SEANGTANFW RRCEVQSSFS KKDALGVGED  120
ESNKGEKPEE IGGLSSSNLR VCKDCGNRAK KECSYRRCRT CCKSRGYDCS THVRSTWVPA  180
ARRRERQMAM MGIGFGAGGG GGGEGGAAGG GGGSSGSSSG VKRPKLVDGS SNHGATNASS  240
TSNATTPRSF DTSSCHHQDA SFKQSLPGQV RAPAVFRCIR VTAISDNAAE FAYQATVSIS  300
GHVFRGFLYD QGLDEKNAFP CISELRFGGV ASTRNGDSSP IVDPSSAYAA SGCRRLLEGI  360
ASCRTSQLCS LYASLDIGTC KQIHEFNLVI LALIT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067729.20.0PREDICTED: LOW QUALITY PROTEIN: protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A2I4GZU24e-98A0A2I4GZU2_JUGRE; protein LATERAL ROOT PRIMORDIUM 1
STRINGXP_010067729.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.22e-51Lateral root primordium (LRP) protein-related