PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC049783.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family SBP
Protein Properties Length: 186aa    MW: 21277.7 Da    PI: 8.6576
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC049783.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.82.3e-4166142177
                   --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
           SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                   +Cq+e+C +dl++ak+yhrrhkvCevh+kapvv+v+gl+qrfCqqCsrfhel efDe+krsCrrrLa+hnerrrk++
  EcC049783.20  66 CCQAERCGTDLTDAKRYHRRHKVCEVHAKAPVVMVAGLRQRFCQQCSRFHELMEFDESKRSCRRRLAGHNERRRKSS 142
                   6**************************************************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.1E-3460128IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.69E-3964146IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.65964141IPR004333Transcription factor, SBP-box
PfamPF031104.9E-3267140IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006631Biological Processfatty acid metabolic process
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0005777Cellular Componentperoxisome
GO:0003677Molecular FunctionDNA binding
GO:0003857Molecular Function3-hydroxyacyl-CoA dehydrogenase activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MINSKRFEGK KTLEDIIEDD MDDDVDEEEG HGNNEGEPFL HDDEKKKKGT NGKRGSSGSR  60
DASPPCCQAE RCGTDLTDAK RYHRRHKVCE VHAKAPVVMV AGLRQRFCQQ CSRFHELMEF  120
DESKRSCRRR LAGHNERRRK SSCEYYGEGS SRRMSGPQLK ECRPADSRGR GTAIPGNSTF  180
KHFQIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-3752140184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Promotes both vegetative phase change and flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16914499}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156. {ECO:0000269|PubMed:16914499}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010062855.11e-135PREDICTED: squamosa promoter-binding-like protein 3
SwissprotQ9S7585e-45SPL5_ARATH; Squamosa promoter-binding-like protein 5
TrEMBLA0A059BV681e-134A0A059BV68_EUCGR; Uncharacterized protein
STRINGXP_010062855.11e-135(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.23e-47squamosa promoter binding protein-like 4
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Xu M, et al.
    Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(8): p. e1006263
    [PMID:27541584]
  3. Ioannidi E, et al.
    Trichome patterning control involves TTG1 interaction with SPL transcription factors.
    Plant Mol. Biol., 2016. 92(6): p. 675-687
    [PMID:27631431]
  4. Jung JH,Lee HJ,Ryu JY,Park CM
    SPL3/4/5 Integrate Developmental Aging and Photoperiodic Signals into the FT-FD Module in Arabidopsis Flowering.
    Mol Plant, 2016. 9(12): p. 1647-1659
    [PMID:27815142]