PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC049756.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRAS

Protein Properties

Length: 703aa MW: 80449.3 Da PI: 6.5566

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC049756.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	355.9	6e-109	332	701	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 ++lL++cA+av+s+d++ a+alL++++++asp gd +qRla++f+++L+arla+++ ++y+ l ++t+ ++ l+a++l+ ++P+ + s+ + EcC049756.10 332 RTLLIQCAQAVASNDHRSANALLNEIRKHASPFGDGTQRLAHCFANGLEARLAGTGGQIYRGLVNRKTT---AADMLNAYHLYLAACPFQRYSNTVS 425 689**********************************************************999999...9******************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 +++ + v+ + r+HiiDf+i +G+ Wp+L+q L+ Rp + p+lRiTg++ p++g +++++etg+rLa++Ae+++vpfe+n+ +akr+e +elee EcC049756.10 426 CRMVIDTVADKMRIHIIDFGILYGFRWPTLIQLLSRRPCP-PKLRITGIDLPQPGfrPAQRIKETGRRLANYAESFNVPFEYNA-IAKRWEFIELEE 520 *******************************99865.9********9*************************.7******* PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290 L+++++E+++Vn++++ ++l+de+v+ es+rd vL+l+++ +P+++++ + ++n++ F++rf eal+++s+lfd+l++ +p e++er+ +E++ l EcC049756.10 521 LKIDRDEVTIVNCMFRFENLFDETVAEESPRDIVLNLIRRAQPDLFIHGVINGNYNAPFFVTRFREALHHFSSLFDMLDTIIPCENQERMLIEKVTL 617 ********************************************************************************************* PP GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +re+ n +aceg er+er e++++W+ r ++aGF +vpls + a+ + ++ + + + v+e ++l++gWk+r L+++S W+ EcC049756.10 618 EREALNTIACEGWERVERPESYKQWQLRNMRAGFVQVPLSRRLAQFVFNKIASRYHKDFVVDEVGKWLLIGWKGRFLYAFSTWK 701 *************************************98887776666666566***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.775	305	681	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.1E-106	332	701	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 703 aa Download sequence Send to blast
MMDPLMGALY PSDGFQPDDQ SISAVVDHCL VSRPTFQSTP DRCGEMHHLV DVAPFSNECR 60 DAPDTEETEF SDAVFEYISR ILMEEDIEEK TCMLQDSLDL LSAEKSFYEV LGKKYPPSPE 120 PSRTNCITYN DKDSNDSLLD GTRYTSTIGS RKIGYYANID QVENPSNYGT MRFERDISPA 180 VFQPNQGGNA ERPDLCSESR FIRQFRMGVE ESSKFLPNQA TTELLYQEPH GKIDKVDRLG 240 ASKRKESLHT EEGNMEERSS KQAFVHEESV LRSDAFDAVL LNIQGEGLAH LMNLRASLKH 300 RVNEIAHKIE EPKGGRGHGK KKRGKVEVVD VRTLLIQCAQ AVASNDHRSA NALLNEIRKH 360 ASPFGDGTQR LAHCFANGLE ARLAGTGGQI YRGLVNRKTT AADMLNAYHL YLAACPFQRY 420 SNTVSCRMVI DTVADKMRIH IIDFGILYGF RWPTLIQLLS RRPCPPKLRI TGIDLPQPGF 480 RPAQRIKETG RRLANYAESF NVPFEYNAIA KRWEFIELEE LKIDRDEVTI VNCMFRFENL 540 FDETVAEESP RDIVLNLIRR AQPDLFIHGV INGNYNAPFF VTRFREALHH FSSLFDMLDT 600 IIPCENQERM LIEKVTLERE ALNTIACEGW ERVERPESYK QWQLRNMRAG FVQVPLSRRL 660 AQFVFNKIAS RYHKDFVVDE VGKWLLIGWK GRFLYAFSTW KPA

Sequence ? help Back to Top

Protein Sequence Length: 703 aa Download sequence Send to blast

MMDPLMGALY PSDGFQPDDQ SISAVVDHCL VSRPTFQSTP DRCGEMHHLV DVAPFSNECR  60
DAPDTEETEF SDAVFEYISR ILMEEDIEEK TCMLQDSLDL LSAEKSFYEV LGKKYPPSPE  120
PSRTNCITYN DKDSNDSLLD GTRYTSTIGS RKIGYYANID QVENPSNYGT MRFERDISPA  180
VFQPNQGGNA ERPDLCSESR FIRQFRMGVE ESSKFLPNQA TTELLYQEPH GKIDKVDRLG  240
ASKRKESLHT EEGNMEERSS KQAFVHEESV LRSDAFDAVL LNIQGEGLAH LMNLRASLKH  300
RVNEIAHKIE EPKGGRGHGK KKRGKVEVVD VRTLLIQCAQ AVASNDHRSA NALLNEIRKH  360
ASPFGDGTQR LAHCFANGLE ARLAGTGGQI YRGLVNRKTT AADMLNAYHL YLAACPFQRY  420
SNTVSCRMVI DTVADKMRIH IIDFGILYGF RWPTLIQLLS RRPCPPKLRI TGIDLPQPGF  480
RPAQRIKETG RRLANYAESF NVPFEYNAIA KRWEFIELEE LKIDRDEVTI VNCMFRFENL  540
FDETVAEESP RDIVLNLIRR AQPDLFIHGV INGNYNAPFF VTRFREALHH FSSLFDMLDT  600
IIPCENQERM LIEKVTLERE ALNTIACEGW ERVERPESYK QWQLRNMRAG FVQVPLSRRL  660
AQFVFNKIAS RYHKDFVVDE VGKWLLIGWK GRFLYAFSTW KPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-42	337	702	25	380	Protein SCARECROW
5b3h_A	3e-42	337	702	24	379	Protein SCARECROW
5b3h_D	3e-42	337	702	24	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010042112.1	0.0	PREDICTED: scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A059A778	0.0	A0A059A778_EUCGR; Uncharacterized protein
STRING	XP_010042112.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM358	27	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein