PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC049642.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NAC | ||||||||
Protein Properties | Length: 190aa MW: 21232.7 Da PI: 8.0554 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 71.9 | 1.6e-22 | 8 | 82 | 53 | 128 |
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++w+fF++ ++++a+g r++r++++gyWkatg+ v+s +++++g+kk+++fy g+ p+g+kt+W ++eyr+ EcC049642.10 8 EDREQWFFFAPLQEREARGGRPSRSMATGYWKATGSPGYVYS-SDKVIGVKKSMIFYMGKPPTGRKTHWKLNEYRA 82 45679*************************************.8999***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 28.599 | 1 | 114 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.7E-25 | 7 | 112 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-9 | 12 | 81 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
LAGELCREDR EQWFFFAPLQ EREARGGRPS RSMATGYWKA TGSPGYVYSS DKVIGVKKSM 60 IFYMGKPPTG RKTHWKLNEY RAIELSPTNL DSTSSNISIL KLRREFALCR VYVVSGRSRA 120 FNRRRLEAVA RETTIQGSDN TASSEGGHEG GGCADASSSE AVAANAGSSH QWEMASLEDP 180 IWDWEQLDWL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-19 | 11 | 112 | 71 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-19 | 11 | 112 | 71 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-19 | 11 | 112 | 71 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-19 | 11 | 112 | 71 | 163 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-19 | 11 | 112 | 74 | 166 | NAC domain-containing protein 19 |
3swm_B | 1e-19 | 11 | 112 | 74 | 166 | NAC domain-containing protein 19 |
3swm_C | 1e-19 | 11 | 112 | 74 | 166 | NAC domain-containing protein 19 |
3swm_D | 1e-19 | 11 | 112 | 74 | 166 | NAC domain-containing protein 19 |
3swp_A | 1e-19 | 11 | 112 | 74 | 166 | NAC domain-containing protein 19 |
3swp_B | 1e-19 | 11 | 112 | 74 | 166 | NAC domain-containing protein 19 |
3swp_C | 1e-19 | 11 | 112 | 74 | 166 | NAC domain-containing protein 19 |
3swp_D | 1e-19 | 11 | 112 | 74 | 166 | NAC domain-containing protein 19 |
4dul_A | 1e-19 | 11 | 112 | 71 | 163 | NAC domain-containing protein 19 |
4dul_B | 1e-19 | 11 | 112 | 71 | 163 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010030466.1 | 1e-125 | PREDICTED: NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 2e-56 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A059AML1 | 1e-124 | A0A059AML1_EUCGR; Uncharacterized protein | ||||
STRING | XP_010030466.1 | 1e-124 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1445 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44350.2 | 4e-62 | NAC domain containing protein 61 |
Publications ? help Back to Top | |||
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