PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC049560.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 468aa    MW: 51840.6 Da    PI: 6.2012
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC049560.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS75.59.5e-243614671108
          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                   l++lL+ cA+avs++d++ a+ lL+++++ +sp+g+  qR+a+yf+ AL+arla+ + + ++a+  s  ++++++++l+a++l + ++P++kf+ l 
  EcC049560.10 361 LRSLLILCAQAVSTNDFKTARGLLKQIRQDSSPSGNGSQRVAHYFADALEARLAG-SAGRSQAFYYSVIQTRSVADKLKAYQLEYSACPFVKFQILF 456
                   6899***************************************************.66667777777777789************************ PP

          GRAS  98 aNqaIleaveg 108
                    N +Il+++e+
  EcC049560.10 457 SNYMILKSAET 467
                   ******99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.901335468IPR005202Transcription factor GRAS
PfamPF035143.3E-21361467IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015074Biological ProcessDNA integration
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MTSLPHQPEP MYYVPSVPIN LDADLNLPSR DTRPNLEMLR HSTSSSESEN IRGGSLSLSD  60
HSNSMDPVLK YVNQILMEEK MEEQPWVVPN IVALWHTEKS LYDALGKKYP DSPEQTKGVD  120
TNQVINSSSW NPWGRRNDRG SNGTNITSSN SCHPLDPNSH DDPEGNNYAS IHAKSPGDVV  180
LQSKVDCKFQ SSVNSVDSLP KKGDNFCYSG PSEVLISPIF NNNESVVQFN KGLEEARKFI  240
PSGIHITIGQ EKDGLAPTIR DKEEIGIRGS HQSENGSRGR KNHESHYARF KEGPTYQQLA  300
SYNEDPELSD LLEKLLLSNK NGGLLSLECK SEKLSEIKDP QDPNGTGDHS NKKGNESTLD  360
LRSLLILCAQ AVSTNDFKTA RGLLKQIRQD SSPSGNGSQR VAHYFADALE ARLAGSAGRS  420
QAFYYSVIQT RSVADKLKAY QLEYSACPFV KFQILFSNYM ILKSAETA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043520.10.0PREDICTED: scarecrow-like protein 34
RefseqXP_018724289.10.0PREDICTED: scarecrow-like protein 34
RefseqXP_018724290.10.0PREDICTED: scarecrow-like protein 34
RefseqXP_018724291.10.0PREDICTED: scarecrow-like protein 34
TrEMBLA0A059D4N00.0A0A059D4N0_EUCGR; Uncharacterized protein
STRINGXP_010043520.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-48SCARECROW-like 14