PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC049474.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

TCP

Protein Properties

Length: 262aa MW: 28960.2 Da PI: 6.9479

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC049474.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	119	5.8e-37	26	138	2	102
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......ssssasec.eaesssssasnsssg... 88 ag+kdrhsk+hT++g+RdRRvRlsa +a++f+d+qd+LGfd++sk+++WL+++akpai+ ltg+ ++ +++ e+ + + ++n g EcC049474.10 26 AGRKDRHSKVHTAKGPRDRRVRLSAYTAIQFYDVQDRLGFDRPSKAVDWLIRKAKPAIDRLTGLppfhpvPTHPNHPLqETLTPVPHNNN---Gsss 119 79**************************************************************98887744444333211111111111...1122 PP TCP 89 .....kaaksaakskksqk 102 s+++s+++ + EcC049474.10 120 ffldsFFPVSSTTSSFNFH 138 3344322222222233333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.9E-32	27	97	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	33.203	28	86	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MEAMKTPAGG ETVKVRGSGH VPRSGAGRKD RHSKVHTAKG PRDRRVRLSA YTAIQFYDVQ 60 DRLGFDRPSK AVDWLIRKAK PAIDRLTGLP PFHPVPTHPN HPLQETLTPV PHNNNGSSSF 120 FLDSFFPVSS TTSSFNFHDQ DLGLSLHSFQ EPGSGLIHAH HHLASSMQGE TPTVSHVASG 180 DLLGFDESNY QRMMGWNRAG GSELTFFMDS QQEHQEPHEV EAFSHQRGAL QSSPDMALQP 240 QPQPHPPPGV YVNDELAMGE HM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	2e-21	33	86	1	54	Putative transcription factor PCF6
5zkt_B	2e-21	33	86	1	54	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010070292.1	0.0	PREDICTED: transcription factor TCP4-like
Swissprot	Q9MAH8	3e-39	TCP3_ARATH; Transcription factor TCP3
TrEMBL	E0CTN3	1e-52	E0CTN3_VITVI; Uncharacterized protein
STRING	XP_010070292.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14158	19	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53230.1	2e-38	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3

Publications ? help Back to Top
Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]