PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC049358.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 195aa    MW: 22439.2 Da    PI: 6.3645
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC049358.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.14.1e-181966148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l+++++ +G g+W++ a+  g++Rt+k+c++rw++yl
     EcC049358.10 19 KGPWTMEEDLILINYIANHGEGSWNSLAKAAGLKRTGKSCRLRWLNYL 66
                     79********************************************97 PP
2Myb_DNA-binding54.52.8e-1772115146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ TteE++l+ ++++++G++ W++Ia++++ gRt++++k++w++
     EcC049358.10  72 RGNITTEEQLLIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNFWRT 115
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-241169IPR009057Homeodomain-like
PROSITE profilePS5129417.1691466IPR017930Myb domain
SuperFamilySSF466894.79E-3117113IPR009057Homeodomain-like
SMARTSM007171.6E-131868IPR001005SANT/Myb domain
PfamPF002494.0E-171966IPR001005SANT/Myb domain
CDDcd001672.24E-102166No hitNo description
PROSITE profilePS5129424.56967121IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.0E-2470121IPR009057Homeodomain-like
SMARTSM007171.7E-1471119IPR001005SANT/Myb domain
PfamPF002498.7E-1672115IPR001005SANT/Myb domain
CDDcd001671.99E-1176115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MDKKPDDDNG KSQDVEVRKG PWTMEEDLIL INYIANHGEG SWNSLAKAAG LKRTGKSCRL  60
RWLNYLRPDV RRGNITTEEQ LLIMELHAKW GNRWSKIAKH LPGRTDNEIK NFWRTRIQKH  120
IKQAEAFSGQ SSEMSDQAST SHMSSMPEPM ETYDSPPSFR GNNNMEPLPV NLSVESNEAY  180
WSMDDLWSMQ LLNGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-261612124128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010033288.11e-144PREDICTED: myb-related protein 305
SwissprotP813915e-90MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A059AGE21e-142A0A059AGE2_EUCGR; Uncharacterized protein
STRINGXP_010033288.11e-143(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.12e-90myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]