PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC048867.50
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family TCP
Protein Properties Length: 356aa    MW: 38897.1 Da    PI: 7.9236
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC048867.50genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.71.2e-3520136289
           TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssaseceaesssssasns 85 
                   +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai++l+++             s          +   sa+++
  EcC048867.50  20 TGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDKLAELppwqpnsssvpstS----------TAPDSAAHN 106
                   79**************************************************************87554443332221..........111111111 PP

           TCP  86 ssg..........................k 89 
                   +++                          +
  EcC048867.50 107 GNSaemavaeesespkynfqlhrqisansR 136
                   111122222222223333333333333321 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.6E-3120134IPR005333Transcription factor, TCP
PROSITE profilePS5136933.2812280IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MKSTEGEIVQ VQGGHIVRST GRKDRHSKVY TAKGPRDRRV RLSAHTAIQF YDVQDRLGYD  60
RPSKAVDWLI KKAKAAIDKL AELPPWQPNS SSVPSTSTAP DSAAHNGNSA EMAVAEESES  120
PKYNFQLHRQ ISANSRNATS QFLPPQLEND QSMLETMKSF FPTSSAASSI NFSSYPSEIM  180
SRSTQQNQDL GLSLHSLQSQ SALIHQSDPQ ENEMSQTLFS TSAPMVYEPG FQRMMGWGTD  240
PSGTDNRSGG RFLFNSPTPL TLPLPLLSQG SAAFPQRGTL QSSFAPTFRS LDEFSVDSAD  300
HHKSQVIHHP SSLFGNRFVS DGLPGFCISP QIQNNGAPHD VVSTRPSSSA SLSNGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-222780154Putative transcription factor PCF6
5zkt_B5e-222780154Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010035834.10.0PREDICTED: transcription factor TCP4
TrEMBLA0A059A1U30.0A0A059A1U3_EUCGR; Uncharacterized protein
STRINGXP_010035834.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24082771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.39e-43TCP family protein