PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC048798.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB_related | ||||||||
Protein Properties | Length: 224aa MW: 25106.4 Da PI: 4.2886 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.1 | 1.3e-10 | 12 | 35 | 22 | 47 |
T-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqky 47 + W++Ia++++ gRt++++k++w+++ EcC048798.10 12 R-WSKIASHLP-GRTDNEIKNHWNTH 35 4.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.098 | 1 | 40 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.64E-10 | 10 | 45 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.4E-8 | 11 | 35 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-15 | 11 | 53 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.51E-8 | 11 | 36 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MFMGQFLRCC NRWSKIASHL PGRTDNEIKN HWNTHIKKKL KKMGIDPLTH KPLVTNNDNT 60 TDQQPHQAAQ THPQESTDPE PTLSSSTNDA SSQTDHNKVD LESPPTVTES KEEERSTLDD 120 AMEAINSFLC SDDVPLIDPS EILVPSSSSS SSSYSTSPSS SWEDNNIFEN LHLPFMDWPP 180 GDFCEDNSSN HGFGFWKDED FSWDMLINAD PVLDQTSASY TGLL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010062267.1 | 1e-133 | PREDICTED: protein ODORANT1 | ||||
TrEMBL | A0A059BTW5 | 1e-132 | A0A059BTW5_EUCGR; Uncharacterized protein | ||||
STRING | XP_010062267.1 | 1e-133 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22001 | 2 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16600.1 | 5e-28 | myb domain protein 43 |