PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC048748.40

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRAS

Protein Properties

Length: 799aa MW: 90278.2 Da PI: 5.1363

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC048748.40	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	355.3	9.4e-109	422	796	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 l++lL+ cA+a+s++d++ a++lL++++e +sp gd qRla+yf ++L+arl+++ ++ + +++ ++++++++ l++++l ++P+++fs + EcC048748.40 422 LRTLLILCAQAISTSDFRSANELLKQIREDSSPFGDGSQRLAHYFGNGLEARLVGNNIRMNDFFSTIVARTTSTADYLKYYHLNISTCPFVQFSMFF 518 5789*************************************************999999999999999999******************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192 aN +Il+ +e+++++HiiDf+i G+QWp+L+q+L+sRpegp +lRiTg++ p+++ +e++eetg rL+k++e+++v fefn++ ++++e ++l EcC048748.40 519 ANYMILKFAEKATTLHIIDFGIAFGFQWPNLIQKLSSRPEGPCKLRITGIDLPQASfhPAERIEETGCRLKKYCERFDVAFEFNFISSRDWELIKLA 615 *************************************************99999***********************9999**** PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289 +L+++++E++aVn+ q ++l+de+v+ +++rd+vL+l+++++P+++v++ + +++n + F++rf eal + s l+d l+a++ +++er ++Ere+ EcC048748.40 616 DLKIQSNETVAVNCLNQFKNLFDETVEDNNPRDAVLNLIRQIKPDIFVHAVRSVSYNLAFFVTRFREALFHLSDLYDLLDATIDCDNKERLVIEREF 712 ********************************************************************************************* PP GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 grei+nv+aceg er++r et+++W+ r +aGFk++pl+++ +k + ++ + + + ++e+ +++++gW++r + S+W EcC048748.40 713 YGREIMNVIACEGLERIQRFETYKQWQVRHVRAGFKSLPLDQDFMKLFRGKMKAWYHKDFVLDEDGNWMLQGWRGRIFYGSSCW 796 ****************************************************888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.786	396	777	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.3E-106	422	796	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0015074	Biological Process	DNA integration
GO:0003676	Molecular Function	nucleic acid binding
GO:0004523	Molecular Function	RNA-DNA hybrid ribonuclease activity

Sequence ? help Back to Top
Protein Sequence Length: 799 aa Download sequence Send to blast
MTMDTLFFHC TNCGNVDDLP IDSHAFSPNP DQHLGLANDF LLDDPFLDLK SSDIAFVSNK 60 VDPATNLPSK PVDLDNGDLI FPSTSMSLDG GSFGPSRSLS KGQSPERDSL SPSRDSDSLD 120 PVLKYINQML MEENMEEQPW VFAGQVALQN TEKSLYDALG QQNLEQSDKS PSQVELSQYI 180 ESPASNLSGS SSAHRSRDAT NVTLSSSDLA DVDILYTTGE HSHAVLKNPD QNFLSNVDSN 240 LQFLANSSSS ITNYDDGSEE SLHGLLVKRI FSTGESMIQF NKGLEEASKF LLTNNQLAIN 300 PEDSKPSSET KKGTTRTRIE EEIDMKSSSN GFKGLKNHER EEDAFQEGRA NKQTALCTEQ 360 SELSDLLDKV LLSTENGPSM CSGDNSVERG VTKDIRPPRN KRGSNRGRGR GKKQKSKNTV 420 DLRTLLILCA QAISTSDFRS ANELLKQIRE DSSPFGDGSQ RLAHYFGNGL EARLVGNNIR 480 MNDFFSTIVA RTTSTADYLK YYHLNISTCP FVQFSMFFAN YMILKFAEKA TTLHIIDFGI 540 AFGFQWPNLI QKLSSRPEGP CKLRITGIDL PQASFHPAER IEETGCRLKK YCERFDVAFE 600 FNFISSRDWE LIKLADLKIQ SNETVAVNCL NQFKNLFDET VEDNNPRDAV LNLIRQIKPD 660 IFVHAVRSVS YNLAFFVTRF REALFHLSDL YDLLDATIDC DNKERLVIER EFYGREIMNV 720 IACEGLERIQ RFETYKQWQV RHVRAGFKSL PLDQDFMKLF RGKMKAWYHK DFVLDEDGNW 780 MLQGWRGRIF YGSSCWVPT

Sequence ? help Back to Top

Protein Sequence Length: 799 aa Download sequence Send to blast

MTMDTLFFHC TNCGNVDDLP IDSHAFSPNP DQHLGLANDF LLDDPFLDLK SSDIAFVSNK  60
VDPATNLPSK PVDLDNGDLI FPSTSMSLDG GSFGPSRSLS KGQSPERDSL SPSRDSDSLD  120
PVLKYINQML MEENMEEQPW VFAGQVALQN TEKSLYDALG QQNLEQSDKS PSQVELSQYI  180
ESPASNLSGS SSAHRSRDAT NVTLSSSDLA DVDILYTTGE HSHAVLKNPD QNFLSNVDSN  240
LQFLANSSSS ITNYDDGSEE SLHGLLVKRI FSTGESMIQF NKGLEEASKF LLTNNQLAIN  300
PEDSKPSSET KKGTTRTRIE EEIDMKSSSN GFKGLKNHER EEDAFQEGRA NKQTALCTEQ  360
SELSDLLDKV LLSTENGPSM CSGDNSVERG VTKDIRPPRN KRGSNRGRGR GKKQKSKNTV  420
DLRTLLILCA QAISTSDFRS ANELLKQIRE DSSPFGDGSQ RLAHYFGNGL EARLVGNNIR  480
MNDFFSTIVA RTTSTADYLK YYHLNISTCP FVQFSMFFAN YMILKFAEKA TTLHIIDFGI  540
AFGFQWPNLI QKLSSRPEGP CKLRITGIDL PQASFHPAER IEETGCRLKK YCERFDVAFE  600
FNFISSRDWE LIKLADLKIQ SNETVAVNCL NQFKNLFDET VEDNNPRDAV LNLIRQIKPD  660
IFVHAVRSVS YNLAFFVTRF REALFHLSDL YDLLDATIDC DNKERLVIER EFYGREIMNV  720
IACEGLERIQ RFETYKQWQV RHVRAGFKSL PLDQDFMKLF RGKMKAWYHK DFVLDEDGNW  780
MLQGWRGRIF YGSSCWVPT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	6e-44	426	752	8	328	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010043533.1	0.0	PREDICTED: scarecrow-like protein 34
Refseq	XP_018724298.1	0.0	PREDICTED: scarecrow-like protein 34
TrEMBL	A0A059D480	0.0	A0A059D480_EUCGR; Uncharacterized protein
STRING	XP_010043533.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-175	SCARECROW-like 14