PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC048724.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 349aa    MW: 39772.4 Da    PI: 7.4121
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC048724.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.17.8e-14191112100
                   EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
            B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   fk+   +d+l+sg l  pkkf+ ++g++   s  + le + + +W++ +    + g+++l kGW+eF +   +  g  vvFk++g+s+f  +v++f+
  EcC048724.10  19 FKII-LPDTLESGKLGTPKKFLGRYGKD--LSSLVLLEVLGSSTWSMGVEKL-NNGTVWLWKGWQEFMQHYSIGHGHLVVFKYKGNSTF--RVMIFD 109
                   5554.479999999***********977..777999999**********433.334599**************************9999..9**999 PP

                   SS CS
            B3  99 ks 100
                   ks
  EcC048724.10 110 KS 111
                   85 PP
2B343.84.5e-14214307198
                   EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                   ffkv +++++ +++ + +p  f+++h +++    k+++    s+r+W vkl  r+++++ + +++ W  Fv+  +L++g ++vF+ ++r++  ++v 
  EcC048724.10 214 FFKVVIRPSYIEHHVVNVPHWFIRQHiQQI----KEIVTLRHSNRTWPVKL--RNYPSGlMQFSSDWIAFVRGTHLRVGNVCVFEPINRDDIVFRVY 304
                   99************************6434....35777777*********..9999998889**********************999888888888 PP

                   EE- CS
            B3  96 vfr 98 
                   +f+
  EcC048724.10 305 IFS 307
                   887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.1E-2016111IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-1916111IPR015300DNA-binding pseudobarrel domain
CDDcd100178.69E-1016109No hitNo description
PROSITE profilePS5086311.92817111IPR003340B3 DNA binding domain
SMARTSM010191.3E-918111IPR003340B3 DNA binding domain
PfamPF023622.7E-1119110IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-18207308IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-18208307IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.392214309IPR003340B3 DNA binding domain
CDDcd100171.45E-12214307No hitNo description
PfamPF023628.1E-12214308IPR003340B3 DNA binding domain
SMARTSM010192.5E-8214309IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
GGVDPDGAAG PRLWSPHFFK IILPDTLESG KLGTPKKFLG RYGKDLSSLV LLEVLGSSTW  60
SMGVEKLNNG TVWLWKGWQE FMQHYSIGHG HLVVFKYKGN STFRVMIFDK SASEIDYSLS  120
SISNLGSGFI LPKREDVIEV EDSEDFAPCQ KKRVDPHSPC SQPSPSCSSP DLEEGIGQSR  180
CRASHPEPNF GGPMSSWPLR SFELACEFDS EYPFFKVVIR PSYIEHHVVN VPHWFIRQHI  240
QQIKEIVTLR HSNRTWPVKL RNYPSGLMQF SSDWIAFVRG THLRVGNVCV FEPINRDDIV  300
FRVYIFSSAG GNLIYVIYSE TLGWLWHDMT SMLKIFIVNQ RNIHSDNVF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065661.10.0PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1
RefseqXP_010065663.10.0PREDICTED: B3 domain-containing transcription factor VRN1 isoform X4
TrEMBLA0A059BB470.0A0A059BB47_EUCGR; Uncharacterized protein
STRINGXP_010065661.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-31B3 family protein