PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC048543.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Nin-like

Protein Properties

Length: 937aa MW: 104798 Da PI: 6.0459

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC048543.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.6	5.8e-29	608	659	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek i+l++l++yF++++k+AAk+Lgvc+T+LKriCRq+GIkRWP+Rkik++ EcC048543.20 608 AEKAITLQVLRQYFAGSLKNAAKSLGVCPTTLKRICRQHGIKRWPSRKIKKV 659 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.291	598	679	IPR003035	RWP-RK domain
Pfam	PF02042	2.2E-25	612	659	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.33E-21	827	918	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.1E-20	831	914	No hit	No description
PROSITE profile	PS51745	23.746	833	916	IPR000270	PB1 domain
SMART	SM00666	9.7E-21	833	916	IPR000270	PB1 domain
Pfam	PF00564	4.2E-15	834	915	IPR000270	PB1 domain
CDD	cd06407	6.25E-37	834	914	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0055114	Biological Process	oxidation-reduction process
GO:0016021	Cellular Component	integral component of membrane
GO:0005319	Molecular Function	lipid transporter activity
GO:0005515	Molecular Function	protein binding
GO:0020037	Molecular Function	heme binding

Sequence ? help Back to Top
Protein Sequence Length: 937 aa Download sequence Send to blast
MEDTVFSPIP MPSTAPESTM DVDYMDELLL EGCWLETVNG SEFLQQSPPS FGAFFDSPCQ 60 WSALENIECN SSPNQLQKNN QELMQTPLHP GDSPMEEGQT KPLDNPQSLS VVECSSRSDK 120 HVNEGSDLRR RWWIGPRVSS GSTSSVMNRL IHSLDHIRDL TKDKDVLIQI WVPVNRGDRR 180 FLTTNDQPFS LNPSSKRLSK YREISVNYQF SAKEDSKELM GLPSRVFLGK IPEWTPDVRF 240 FRSDEYARVD HAQHFDVRGT LALPIFEQGS RTCLGVIEVV MTTQKIQYQP EIQSVCKALE 300 AFDLRSSEVF GNLSEESHWK SYEAAIPEIR EVLRSACETH GLPLAQTWVP CSQQGKGGCR 360 HSNENYVHCV STIDHACHVA DPLLQPFHEA CSEHHLLKGQ GVVGRAFQTN QPCFSSDITS 420 SGRTEYPLSH HARMFGLCAA VAIRLRSIHT GTADFVLEFF LPMDCKDHDK QKKMLGSLSI 480 IIQQVCQSLR VITNEELEEE TVLPEIPVPS EGRPQGEWSL EVESNYLERC SEEDLSWSAH 540 VEKVQQSDTV ASATQKARAG ESFVEKSLDF GQFQDSSTER GEDCSFYGEG RCSDAAREKT 600 GDKKRTKAEK AITLQVLRQY FAGSLKNAAK SLGVCPTTLK RICRQHGIKR WPSRKIKKVG 660 HSLQKLQLVM DTVRVQGAPG PLQIDSFYTN FPELASPNLS ITSPLSASNH GDHLQPLDTQ 720 PGALNFDSCA AVSKSTSSSC SHSSSSSQCC SSGTKQHPSI VDLVAEEHLV SDNNMDINPS 780 KMVQSHVELQ GSSQEEQKLL PRSQSRRSFN PNMENPPQPP PQYNCQASRE GDPLRVKVAF 840 ADENIRFRMQ KDWDLKDLWG EIARRFCIED TSKFDLKYLD DDSEWVLLTC DADLDECIDV 900 SRSSPGSTVK LSVRKSHHRR LGSSLGSGGP PRMHGAS

Sequence ? help Back to Top

Protein Sequence Length: 937 aa Download sequence Send to blast

MEDTVFSPIP MPSTAPESTM DVDYMDELLL EGCWLETVNG SEFLQQSPPS FGAFFDSPCQ  60
WSALENIECN SSPNQLQKNN QELMQTPLHP GDSPMEEGQT KPLDNPQSLS VVECSSRSDK  120
HVNEGSDLRR RWWIGPRVSS GSTSSVMNRL IHSLDHIRDL TKDKDVLIQI WVPVNRGDRR  180
FLTTNDQPFS LNPSSKRLSK YREISVNYQF SAKEDSKELM GLPSRVFLGK IPEWTPDVRF  240
FRSDEYARVD HAQHFDVRGT LALPIFEQGS RTCLGVIEVV MTTQKIQYQP EIQSVCKALE  300
AFDLRSSEVF GNLSEESHWK SYEAAIPEIR EVLRSACETH GLPLAQTWVP CSQQGKGGCR  360
HSNENYVHCV STIDHACHVA DPLLQPFHEA CSEHHLLKGQ GVVGRAFQTN QPCFSSDITS  420
SGRTEYPLSH HARMFGLCAA VAIRLRSIHT GTADFVLEFF LPMDCKDHDK QKKMLGSLSI  480
IIQQVCQSLR VITNEELEEE TVLPEIPVPS EGRPQGEWSL EVESNYLERC SEEDLSWSAH  540
VEKVQQSDTV ASATQKARAG ESFVEKSLDF GQFQDSSTER GEDCSFYGEG RCSDAAREKT  600
GDKKRTKAEK AITLQVLRQY FAGSLKNAAK SLGVCPTTLK RICRQHGIKR WPSRKIKKVG  660
HSLQKLQLVM DTVRVQGAPG PLQIDSFYTN FPELASPNLS ITSPLSASNH GDHLQPLDTQ  720
PGALNFDSCA AVSKSTSSSC SHSSSSSQCC SSGTKQHPSI VDLVAEEHLV SDNNMDINPS  780
KMVQSHVELQ GSSQEEQKLL PRSQSRRSFN PNMENPPQPP PQYNCQASRE GDPLRVKVAF  840
ADENIRFRMQ KDWDLKDLWG EIARRFCIED TSKFDLKYLD DDSEWVLLTC DADLDECIDV  900
SRSSPGSTVK LSVRKSHHRR LGSSLGSGGP PRMHGAS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010061177.1	0.0	PREDICTED: protein NLP4 isoform X2
Refseq	XP_010061178.1	0.0	PREDICTED: protein NLP4 isoform X2
Refseq	XP_018731556.1	0.0	PREDICTED: protein NLP4 isoform X1
Refseq	XP_018731557.1	0.0	PREDICTED: protein NLP4 isoform X1
Refseq	XP_018731558.1	0.0	PREDICTED: protein NLP4 isoform X2
Refseq	XP_018731559.1	0.0	PREDICTED: protein NLP4 isoform X2
Refseq	XP_018731560.1	0.0	PREDICTED: protein NLP4 isoform X2
Refseq	XP_018731561.1	0.0	PREDICTED: protein NLP4 isoform X2
Refseq	XP_018731562.1	0.0	PREDICTED: protein NLP4 isoform X2
Refseq	XP_018731563.1	0.0	PREDICTED: protein NLP4 isoform X2
TrEMBL	A0A059BPH8	0.0	A0A059BPH8_EUCGR; Uncharacterized protein
STRING	XP_010061177.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein