PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC048499.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB_related | ||||||||
Protein Properties | Length: 73aa MW: 8673.97 Da PI: 10.9989 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.6 | 1.5e-13 | 18 | 66 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46 +g+W++eEd++lv ++k++G +W+ a+ gRt++++k++w++ EcC048499.10 18 KGAWSAEEDQKLVAYIKRYGIWNWTHMAEPAAsrlSGRTDNEIKNYWNT 66 79******************99*****998888888***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-20 | 13 | 71 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.954 | 13 | 72 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.24E-14 | 13 | 71 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-10 | 17 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-11 | 18 | 66 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.47E-9 | 20 | 68 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 73 aa Download sequence Send to blast |
MARFPRVDKS NSKKTVKKGA WSAEEDQKLV AYIKRYGIWN WTHMAEPAAS RLSGRTDNEI 60 KNYWNTRLKK RFL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010054185.1 | 5e-38 | PREDICTED: transcription repressor MYB5 | ||||
TrEMBL | A0A059CB38 | 3e-36 | A0A059CB38_EUCGR; Uncharacterized protein | ||||
STRING | XP_010054185.1 | 2e-37 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 1e-13 | MYB-like 102 |