PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC048452.80 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | LBD | ||||||||
Protein Properties | Length: 281aa MW: 30499.5 Da PI: 9.674 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 84.9 | 1.1e-26 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C++C+vlr++C +dC+++p++ +q++++ +++k++G++ +l+ll + p + r+ +++sl+ eA+ r+ +P+yG+vg++++++++l+q+++ EcC048452.80 4 SCNGCRVLRKACGDDCPIRPCLhwiktSPSQSNATLFLAKFYGRAGLLNLLLSGPAHLRPSIFKSLLHEACGRIVNPIYGSVGLLWSGSWHLCQAAV 100 6*********************9998766889***************************************************************** PP DUF260 93 elallke 99 +++l+++ EcC048452.80 101 DAVLAGD 107 9998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.501 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.7E-22 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005509 | Molecular Function | calcium ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MKGSCNGCRV LRKACGDDCP IRPCLHWIKT SPSQSNATLF LAKFYGRAGL LNLLLSGPAH 60 LRPSIFKSLL HEACGRIVNP IYGSVGLLWS GSWHLCQAAV DAVLAGDPIA RVSSESAIGC 120 ATPPLEAGDI RHVPKTKPSA AHSDQLRKVR SRRRRFKRSA PKTRHEEAEK AGGDGADSDE 180 PASRDSRGSR GSAADRELAE AEAGERAADG DDSELELTLR LEPRRARRAS EEPQRDQITG 240 VCDGDTRVLS SGLDVRRRLR TGSTCCLRVG SWVHSAVRKY K |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010036886.1 | 0.0 | PREDICTED: LOB domain-containing protein 40 | ||||
TrEMBL | A0A059A369 | 1e-132 | A0A059A369_EUCGR; Uncharacterized protein | ||||
STRING | XP_010036886.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 6e-68 | LOB domain-containing protein 41 |