PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC048109.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB_related | ||||||||
Protein Properties | Length: 226aa MW: 25206.5 Da PI: 4.5485 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.7 | 1.1e-17 | 1 | 43 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +T+eE+e+++ ++++ G++ W+ Ia++++ gRt++++k++w++yl EcC048109.20 1 FTPEEEEIILSLHRLIGNK-WSQIAKHLP-GRTDNEIKNHWHSYL 43 8******************.*********.************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.481 | 1 | 47 | IPR017930 | Myb domain |
CDD | cd00167 | 7.93E-14 | 1 | 43 | No hit | No description |
Pfam | PF00249 | 5.2E-16 | 1 | 43 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.66E-15 | 1 | 48 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.8E-23 | 1 | 44 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-12 | 1 | 45 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006810 | Biological Process | transport | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
FTPEEEEIIL SLHRLIGNKW SQIAKHLPGR TDNEIKNHWH SYLKKKVANK TESSSSSEAR 60 HDAQSQCTNS DNVESLPSPD QIPTNQNASV HAPSQEQKEK MSLDFPNGGP RSCLPKIFFA 120 EWLNQADQGY NVPTYGDAFD YRSNLQDSLV HDWCTSDFGN SYGGEYVGNE LSKGSASASV 180 SDMYSSRLKS EMDQVSGGGF YLDYFSGDDI CSQFDMGSDV NVMLYT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-13 | 1 | 47 | 62 | 108 | B-MYB |
1mbj_A | 8e-14 | 1 | 47 | 6 | 52 | MYB PROTO-ONCOGENE PROTEIN |
1mbk_A | 8e-14 | 1 | 47 | 6 | 52 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010035126.1 | 1e-160 | PREDICTED: transcription factor LAF1 | ||||
TrEMBL | A0A058ZYA5 | 1e-158 | A0A058ZYA5_EUCGR; Uncharacterized protein | ||||
STRING | XP_010035126.1 | 1e-159 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52260.1 | 2e-19 | myb domain protein 19 |