PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC047836.40
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 587aa    MW: 64576.3 Da    PI: 5.4374
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC047836.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS225.82.1e-693695851219
          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                   l++lL++cA+av+++d+  ++++L+++++++sp gd +qRla++++ AL+ar a+++s++yk l +++ts    ++ l+a++lf  ++P+ k+sh+t
  EcC047836.40 369 LRTLLINCAQAVAADDHLSTSEFLKQIRQHSSPFGDGNQRLAHCLADALEARQAGTGSQIYKGLISKRTS---AANILKAYHLFLAACPFRKLSHFT 462
                   6789************************************************************999998...899********************* PP

          GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                   aN++I   ++ + rvHiiDf+i +G+QWp+L+q ++sRp+gpp++RiTg++ p++g   +e++eetg+rLa +Ae ++vpfe+n+ +ak++e++++e
  EcC047836.40 463 ANRTIRSVASDSMRVHIIDFGILYGFQWPTLMQRFSSRPGGPPKIRITGIDFPQPGfrPAERVEETGRRLAAYAELFKVPFEYNA-IAKKWETIQVE 558
                   *******************************************************9*****************************.7********** PP

          GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvs 219
                   eL+++++E l+Vn++++ ++lldesv+
  EcC047836.40 559 ELKIDKDELLVVNCIYRSKNLLDESVA 585
                   **********************99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.492343587IPR005202Transcription factor GRAS
PfamPF035147.2E-67369585IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MGMDPRFNGY SASVAGLSLD KQSLPWFADP TLVPGDRLET NGFRGGVQYV SSPVATQISG  60
APSASNSCMT QEEDSPEDCD FSDAVLRYIS EMLMEEDMEE KNCMLQESLD LQAAEKSLYE  120
AIGKKYPPSP EPVPNNTYLS GESPEDDLSV NSYGCLMNNP LVSHSCENTS LRQVPSPSLY  180
GLSQSSYASS NSVVGGMDGF VDSPASVAQG PDFSGESHSI WQFNKGVEEA SKFLPGGNRF  240
FDNAVSKGSL TESKVRSSKV AAKLERKDHC ECSPNGSRGR KNPHRGDADL EEERSSKQAA  300
IFSESPLRSD MFDNVLICDE DQDHITVLQE TLQDGRDTVN MLRNGQSKGL KGSKGRGRKQ  360
NGKKEVVDLR TLLINCAQAV AADDHLSTSE FLKQIRQHSS PFGDGNQRLA HCLADALEAR  420
QAGTGSQIYK GLISKRTSAA NILKAYHLFL AACPFRKLSH FTANRTIRSV ASDSMRVHII  480
DFGILYGFQW PTLMQRFSSR PGGPPKIRIT GIDFPQPGFR PAERVEETGR RLAAYAELFK  540
VPFEYNAIAK KWETIQVEEL KIDKDELLVV NCIYRSKNLL DESVAAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-343525761222Protein SCARECROW
5b3h_D4e-343525761222Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047793.10.0PREDICTED: scarecrow-like protein 9
RefseqXP_010047802.10.0PREDICTED: scarecrow-like protein 9
SwissprotO809331e-153SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A059DEZ80.0A0A059DEZ8_EUCGR; Uncharacterized protein
STRINGXP_010047793.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-153GRAS family protein