PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC047836.40 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | GRAS | ||||||||
Protein Properties | Length: 587aa MW: 64576.3 Da PI: 5.4374 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 225.8 | 2.1e-69 | 369 | 585 | 1 | 219 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 l++lL++cA+av+++d+ ++++L+++++++sp gd +qRla++++ AL+ar a+++s++yk l +++ts ++ l+a++lf ++P+ k+sh+t EcC047836.40 369 LRTLLINCAQAVAADDHLSTSEFLKQIRQHSSPFGDGNQRLAHCLADALEARQAGTGSQIYKGLISKRTS---AANILKAYHLFLAACPFRKLSHFT 462 6789************************************************************999998...899********************* PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192 aN++I ++ + rvHiiDf+i +G+QWp+L+q ++sRp+gpp++RiTg++ p++g +e++eetg+rLa +Ae ++vpfe+n+ +ak++e++++e EcC047836.40 463 ANRTIRSVASDSMRVHIIDFGILYGFQWPTLMQRFSSRPGGPPKIRITGIDFPQPGfrPAERVEETGRRLAAYAELFKVPFEYNA-IAKKWETIQVE 558 *******************************************************9*****************************.7********** PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvs 219 eL+++++E l+Vn++++ ++lldesv+ EcC047836.40 559 ELKIDKDELLVVNCIYRSKNLLDESVA 585 **********************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 45.492 | 343 | 587 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.2E-67 | 369 | 585 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 587 aa Download sequence Send to blast |
MGMDPRFNGY SASVAGLSLD KQSLPWFADP TLVPGDRLET NGFRGGVQYV SSPVATQISG 60 APSASNSCMT QEEDSPEDCD FSDAVLRYIS EMLMEEDMEE KNCMLQESLD LQAAEKSLYE 120 AIGKKYPPSP EPVPNNTYLS GESPEDDLSV NSYGCLMNNP LVSHSCENTS LRQVPSPSLY 180 GLSQSSYASS NSVVGGMDGF VDSPASVAQG PDFSGESHSI WQFNKGVEEA SKFLPGGNRF 240 FDNAVSKGSL TESKVRSSKV AAKLERKDHC ECSPNGSRGR KNPHRGDADL EEERSSKQAA 300 IFSESPLRSD MFDNVLICDE DQDHITVLQE TLQDGRDTVN MLRNGQSKGL KGSKGRGRKQ 360 NGKKEVVDLR TLLINCAQAV AADDHLSTSE FLKQIRQHSS PFGDGNQRLA HCLADALEAR 420 QAGTGSQIYK GLISKRTSAA NILKAYHLFL AACPFRKLSH FTANRTIRSV ASDSMRVHII 480 DFGILYGFQW PTLMQRFSSR PGGPPKIRIT GIDFPQPGFR PAERVEETGR RLAAYAELFK 540 VPFEYNAIAK KWETIQVEEL KIDKDELLVV NCIYRSKNLL DESVAAD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 4e-34 | 352 | 576 | 1 | 222 | Protein SCARECROW |
5b3h_D | 4e-34 | 352 | 576 | 1 | 222 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010047793.1 | 0.0 | PREDICTED: scarecrow-like protein 9 | ||||
Refseq | XP_010047802.1 | 0.0 | PREDICTED: scarecrow-like protein 9 | ||||
Swissprot | O80933 | 1e-153 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | A0A059DEZ8 | 0.0 | A0A059DEZ8_EUCGR; Uncharacterized protein | ||||
STRING | XP_010047793.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-153 | GRAS family protein |