PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC047601.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 303aa    MW: 34511.9 Da    PI: 5.2491
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC047601.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.82.8e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEd++l+++vk +G g W + a+  g++R++ +c++rw++yl
     EcC047601.20 14 KGAWCAEEDKILINYVKIHGEGKWGRAAQNAGLKRCARSCRLRWLNYL 61
                     799*******************************************97 PP
2Myb_DNA-binding51.62.1e-1667111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ T++E++l+++++++lG++ W++Ia +++ gRt++++k++w++ 
     EcC047601.20  67 RGNITEDEEDLIIRLHRLLGNR-WALIAGRLP-GRTDNEIKNYWNTT 111
                      7999******************.*********.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-20664IPR009057Homeodomain-like
PROSITE profilePS5129412.968961IPR017930Myb domain
SuperFamilySSF466894.59E-2811108IPR009057Homeodomain-like
SMARTSM007172.8E-101363IPR001005SANT/Myb domain
PfamPF002491.3E-121461IPR001005SANT/Myb domain
CDDcd001673.93E-91661No hitNo description
PROSITE profilePS5129425.39462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.3E-2465115IPR009057Homeodomain-like
SMARTSM007175.5E-1666114IPR001005SANT/Myb domain
PfamPF002496.2E-1567111IPR001005SANT/Myb domain
CDDcd001675.31E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MVRRPYCEKQ GMTKGAWCAE EDKILINYVK IHGEGKWGRA AQNAGLKRCA RSCRLRWLNY  60
LRPGIKRGNI TEDEEDLIIR LHRLLGNRWA LIAGRLPGRT DNEIKNYWNT TLAKKCGSFS  120
PQSCVRKVNH EEETAQCRNH GSMNNFDLVN VDQPSVVSMS GIPVLPQEEK HCFVDKGIGL  180
MNNSCSIDNQ GLFSSLLVGD DGDENHPSFL MNIDNDNDFI MGLPDMDSLL FPGNRTMHED  240
NNYDIFGGYD KNNVMSSSPY DTTSDDQVVR VETEVMHDQQ PSLHVELKKL AMFLDLEDEW  300
KEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25121185110B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010033737.11e-161PREDICTED: protein ODORANT1
TrEMBLA0A059AIH30.0A0A059AIH3_EUCGR; Uncharacterized protein
STRINGXP_010034807.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.14e-54myb domain protein 5