PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC047503.40
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 662aa    MW: 73297.9 Da    PI: 4.6943
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC047503.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3182e-973466551312
          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                   l++lL+ cA+av+ gd+  a +lL++++ +asp+gd mqR+a+yf+++L+arla+s+ ++ykal +++ts   +++ l+a++l+  ++P++k+s++ 
  EcC047503.40 346 LRTLLTLCAQAVNMGDQGSAGELLKQIRRHASPTGDGMQRMAHYFANGLEARLAGSGFQIYKALMARPTS---VVDFLKAHHLLLAACPFMKLSNFF 439
                   5789*****************************************************************9...************************ PP

          GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                    N++I++ ++++ ++Hi+Df+i +G+QWp L++ L+s p+gpp+l+iTg++ p++g   +e +eetg+rLa++A++++vpf+fn+ +ak+++++++e
  EcC047503.40 440 SNKTIVDVANKAAKLHIVDFGILYGFQWPGLIECLSSSPGGPPKLQITGIDLPQPGfkPTEIVEETGKRLASYAKTFNVPFKFNA-IAKNWDTIKVE 535
                   *******************************************************9999999***********************.7********** PP

          GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                   eL+++++E l+Vn++l++h++lde+v  es+rd vL+l+++++P+v+++      h+ + F  rf eal ++sa+fd+lea++pr+  er  +E+e+
  EcC047503.40 536 ELNIQSDEILVVNCILNIHHILDETVMAESPRDVVLNLIRKMNPDVFILGVISGGHGVPFFTSRFREALFHFSAIFDMLEATVPRDVPERLLLEQEV 632
                   ************************************************************************************************* PP

          GRAS 290 lgreivnvvacegaerrerhetl 312
                    gr+++n++aceg+er+er et 
  EcC047503.40 633 AGRKAMNIIACEGSERIERPETS 655
                   ********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.017320662IPR005202Transcription factor GRAS
PfamPF035146.9E-95346655IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MDRPPDELNS FNDGYVLDDS DGAAFSIFPE DDLVSTLTID DMFKDFTYSY SCAPPLGANL  60
GKELAEDYDF GDEALKYINQ MLMEEGIEEK SIVCQEALAL EAAEKSFYEV IGERYPPAAD  120
QHPSPNQTNE SLCGSSAGAI NWVEWEPHCG SQEHTVHTTV SQSISSSIGQ SFDGVFVSIS  180
TTGHAESLAS DVAWPELVGS ECVIQFNGNG DEAGELLSFG NGILVDPERG EFSIDEPSEE  240
ATSLVPNLEN DENMFSDLGR YRGKKNPLWE DVNLEEGRMK KHSSVYTEST VRSEMFDIVL  300
LNRKGSEAAL RETLRNVMKN GQLKAPNQRK ARGKKQGRRK RDVVDLRTLL TLCAQAVNMG  360
DQGSAGELLK QIRRHASPTG DGMQRMAHYF ANGLEARLAG SGFQIYKALM ARPTSVVDFL  420
KAHHLLLAAC PFMKLSNFFS NKTIVDVANK AAKLHIVDFG ILYGFQWPGL IECLSSSPGG  480
PPKLQITGID LPQPGFKPTE IVEETGKRLA SYAKTFNVPF KFNAIAKNWD TIKVEELNIQ  540
SDEILVVNCI LNIHHILDET VMAESPRDVV LNLIRKMNPD VFILGVISGG HGVPFFTSRF  600
REALFHFSAI FDMLEATVPR DVPERLLLEQ EVAGRKAMNI IACEGSERIE RPETSKCRMC  660
ET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-4235364825310Protein SCARECROW
5b3h_D2e-4235364825310Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010032389.10.0PREDICTED: scarecrow-like protein 9
TrEMBLA0A059ADH90.0A0A059ADH9_EUCGR; Uncharacterized protein
STRINGXP_010032389.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-144SCARECROW-like 14