PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC047503.40 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | GRAS | ||||||||
Protein Properties | Length: 662aa MW: 73297.9 Da PI: 4.6943 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 318 | 2e-97 | 346 | 655 | 1 | 312 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 l++lL+ cA+av+ gd+ a +lL++++ +asp+gd mqR+a+yf+++L+arla+s+ ++ykal +++ts +++ l+a++l+ ++P++k+s++ EcC047503.40 346 LRTLLTLCAQAVNMGDQGSAGELLKQIRRHASPTGDGMQRMAHYFANGLEARLAGSGFQIYKALMARPTS---VVDFLKAHHLLLAACPFMKLSNFF 439 5789*****************************************************************9...************************ PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192 N++I++ ++++ ++Hi+Df+i +G+QWp L++ L+s p+gpp+l+iTg++ p++g +e +eetg+rLa++A++++vpf+fn+ +ak+++++++e EcC047503.40 440 SNKTIVDVANKAAKLHIVDFGILYGFQWPGLIECLSSSPGGPPKLQITGIDLPQPGfkPTEIVEETGKRLASYAKTFNVPFKFNA-IAKNWDTIKVE 535 *******************************************************9999999***********************.7********** PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289 eL+++++E l+Vn++l++h++lde+v es+rd vL+l+++++P+v+++ h+ + F rf eal ++sa+fd+lea++pr+ er +E+e+ EcC047503.40 536 ELNIQSDEILVVNCILNIHHILDETVMAESPRDVVLNLIRKMNPDVFILGVISGGHGVPFFTSRFREALFHFSAIFDMLEATVPRDVPERLLLEQEV 632 ************************************************************************************************* PP GRAS 290 lgreivnvvacegaerrerhetl 312 gr+++n++aceg+er+er et EcC047503.40 633 AGRKAMNIIACEGSERIERPETS 655 ********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 59.017 | 320 | 662 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.9E-95 | 346 | 655 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 662 aa Download sequence Send to blast |
MDRPPDELNS FNDGYVLDDS DGAAFSIFPE DDLVSTLTID DMFKDFTYSY SCAPPLGANL 60 GKELAEDYDF GDEALKYINQ MLMEEGIEEK SIVCQEALAL EAAEKSFYEV IGERYPPAAD 120 QHPSPNQTNE SLCGSSAGAI NWVEWEPHCG SQEHTVHTTV SQSISSSIGQ SFDGVFVSIS 180 TTGHAESLAS DVAWPELVGS ECVIQFNGNG DEAGELLSFG NGILVDPERG EFSIDEPSEE 240 ATSLVPNLEN DENMFSDLGR YRGKKNPLWE DVNLEEGRMK KHSSVYTEST VRSEMFDIVL 300 LNRKGSEAAL RETLRNVMKN GQLKAPNQRK ARGKKQGRRK RDVVDLRTLL TLCAQAVNMG 360 DQGSAGELLK QIRRHASPTG DGMQRMAHYF ANGLEARLAG SGFQIYKALM ARPTSVVDFL 420 KAHHLLLAAC PFMKLSNFFS NKTIVDVANK AAKLHIVDFG ILYGFQWPGL IECLSSSPGG 480 PPKLQITGID LPQPGFKPTE IVEETGKRLA SYAKTFNVPF KFNAIAKNWD TIKVEELNIQ 540 SDEILVVNCI LNIHHILDET VMAESPRDVV LNLIRKMNPD VFILGVISGG HGVPFFTSRF 600 REALFHFSAI FDMLEATVPR DVPERLLLEQ EVAGRKAMNI IACEGSERIE RPETSKCRMC 660 ET |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-42 | 353 | 648 | 25 | 310 | Protein SCARECROW |
5b3h_D | 2e-42 | 353 | 648 | 25 | 310 | Protein SCARECROW |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010032389.1 | 0.0 | PREDICTED: scarecrow-like protein 9 | ||||
TrEMBL | A0A059ADH9 | 0.0 | A0A059ADH9_EUCGR; Uncharacterized protein | ||||
STRING | XP_010032389.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-144 | SCARECROW-like 14 |