PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC047492.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 171aa MW: 19547.9 Da PI: 6.8545 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 61.4 | 1.5e-19 | 35 | 123 | 4 | 100 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100 vl sd+ +sg l +pkkfa+++g++ s l+ +sg +W++++ r++ + + l++GW+ Fvk +k g f+vF+++g+s f +v ++++s EcC047492.20 35 VL--SDHIQSGKLAIPKKFARRYGNN--FSDLACLNVPSGDVWKMEV--RRQNDDFCLQDGWSYFVKHYLIKHGYFLVFRYEGNSVF--HVVICDRS 123 45..9999***************977..787999999**********..**********************************9***..****9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.22E-23 | 25 | 123 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.9E-25 | 25 | 123 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.24E-19 | 29 | 121 | No hit | No description |
PROSITE profile | PS50863 | 12.788 | 30 | 123 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.9E-16 | 31 | 123 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.2E-17 | 34 | 122 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MGEGNACWSD SGPLHAQEDG QLLFEAETPH FFRIVLSDHI QSGKLAIPKK FARRYGNNFS 60 DLACLNVPSG DVWKMEVRRQ NDDFCLQDGW SYFVKHYLIK HGYFLVFRYE GNSVFHVVIC 120 DRSTSEIKYP MVSKENCGNS KPGDEHLLSP SDNDFQSCKC KRRESPSSTQ V |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018715841.1 | 5e-61 | PREDICTED: B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | A0A058ZRB6 | 3e-44 | A0A058ZRB6_EUCGR; Uncharacterized protein | ||||
STRING | XP_010026407.1 | 2e-60 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-25 | B3 family protein |