PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC047453.30 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NF-YB | ||||||||
Protein Properties | Length: 260aa MW: 29197.6 Da PI: 6.5858 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 175.6 | 4.9e-55 | 88 | 184 | 1 | 97 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 vreqdrf+Pianv+rim+k+lP +akis+daket+qecvse+isf+t+ea+d+cqre+rkti+++d+lwa+++lGf+dy+epl++yl++yre+eg++ EcC047453.30 88 VREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANDRCQREQRKTITAEDVLWAMSKLGFDDYIEPLTIYLHRYREIEGDR 184 69*********************************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 5.7E-51 | 83 | 186 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.02E-38 | 91 | 187 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.2E-25 | 94 | 158 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 2.1E-16 | 122 | 140 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 125 | 141 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 2.1E-16 | 141 | 159 | No hit | No description |
PRINTS | PR00615 | 2.1E-16 | 160 | 178 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006875 | Biological Process | cellular metal ion homeostasis | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0055085 | Biological Process | transmembrane transport | ||||
GO:1990388 | Biological Process | xylem-to-phloem iron transport | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0008168 | Molecular Function | methyltransferase activity | ||||
GO:0016787 | Molecular Function | hydrolase activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046915 | Molecular Function | transition metal ion transmembrane transporter activity | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MVLDQNASSA FPTALFSIVF FVQVATATLR PYHHQTYRDR EGGRVDLTVR VEMERGFHGY 60 RKLPSNTAAN NNNGNHHLNA DENNECTVRE QDRFMPIANV IRIMRKILPP HAKISDDAKE 120 TIQECVSEYI SFITGEANDR CQREQRKTIT AEDVLWAMSK LGFDDYIEPL TIYLHRYREI 180 EGDRGSLRSE PFMKRVVDYS NLGVPPTAFA RGFPMAGPAG PHHAYFGAPP MGGYYKDGNT 240 SHEGSSNGAI GNGEAHGQFE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 2e-61 | 87 | 179 | 5 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018729096.1 | 1e-151 | PREDICTED: nuclear transcription factor Y subunit B-6 | ||||
Swissprot | Q84W66 | 5e-69 | NFYB6_ARATH; Nuclear transcription factor Y subunit B-6 | ||||
TrEMBL | A0A059C9R3 | 1e-142 | A0A059C9R3_EUCGR; Uncharacterized protein | ||||
STRING | XP_010059546.1 | 1e-150 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 1e-67 | nuclear factor Y, subunit B6 |