PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC047441.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 343aa    MW: 38241.9 Da    PI: 8.4386
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC047441.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.61.7e-51151421128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 
                   l pGfrFhPtdeelvv+yL kkv+ ++l++ ++i+e+++yk++Pw+Lp+k+  +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+++++ +
  EcC047441.10  15 LLPGFRFHPTDEELVVQYLGKKVALEPLPV-SIIAEINLYKFDPWELPSKAIFGEHEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPIFAStG 110
                   579***************************.89***************7777799**************************************9866 PP

           NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                   + +vg+kk Lvfy+g+ pkg+ktdW+mheyr+
  EcC047441.10 111 KCKVGVKKALVFYRGKPPKGTKTDWIMHEYRF 142
                   778***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-628176IPR003441NAC domain
PROSITE profilePS5100559.09915176IPR003441NAC domain
PfamPF023652.4E-2617141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MASTDSPTSS QHLHLLPGFR FHPTDEELVV QYLGKKVALE PLPVSIIAEI NLYKFDPWEL  60
PSKAIFGEHE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPIFASTG KCKVGVKKAL  120
VFYRGKPPKG TKTDWIMHEY RFTDGNSAPK PPKADSASKK GSLRLDDWVL CRIYKKSSPV  180
RLVEPRNENF APLNMNPPAS KGVNYSSTLP ANDDGAFFEG MLPETINSTS ISHQLPFSTM  240
KPEVSISHSA MATSDESRRG CPAPVQYWSE DGSAISGKRY EGGHHDQNGG GNGMDDRNSF  300
VSLLHQIPQN SEPFHPHMFL ENPIGDGDFQ RQFQPPGMNW PNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-711217817170NAC domain-containing protein 19
3swm_B1e-711217817170NAC domain-containing protein 19
3swm_C1e-711217817170NAC domain-containing protein 19
3swm_D1e-711217817170NAC domain-containing protein 19
3swp_A1e-711217817170NAC domain-containing protein 19
3swp_B1e-711217817170NAC domain-containing protein 19
3swp_C1e-711217817170NAC domain-containing protein 19
3swp_D1e-711217817170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00058PBMTransfer from AT1G61110Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010052353.10.0PREDICTED: NAC transcription factor 25
SwissprotQ8GY429e-94NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A059CDE90.0A0A059CDE9_EUCGR; Uncharacterized protein
STRINGXP_010052353.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19028276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.13e-90NAC domain containing protein 25