PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC047341.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 337aa    MW: 38054.2 Da    PI: 8.2368
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC047341.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.92.4e-158216215100
                   -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS
            B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100
                    l +pk+f++++g++   s  + l+ + g +W vkl  +k++++ ++l kGW++F +   +  g  +vFk++g+s f  +v +f+ks
  EcC047341.30  82 SLGIPKSFLRRYGKD--LSGLVLLKVPGGSTWPVKL--EKSDDGkVWLWKGWRGFMEHYSIGHGHLLVFKYEGDSVF--HVIIFDKS 162
                   578*********977..7779***************..8887777****************************9999..**999985 PP
2B360.52.8e-19236327198
                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                   ffkv +++ + +++ l++p +f+++  +   ++k++     + rsW+vkl  r +  +  l++GW++F+++n+L +gD +vF+l++r++  ++v+++
  EcC047341.30 236 FFKVVVQPTYVRKS-LTIPQEFITKQVQ---KDKKIATLRYKDRSWQVKL--RSHEHTACLSTGWSSFARENDLLVGDCCVFELIDRDDIVFRVSIV 326
                   89999999999998.********87733...345677788899*******..999999***************************999988888888 PP

                   - CS
            B3  98 r 98 
                   r
  EcC047341.30 327 R 327
                   7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-212645IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.84468162IPR003340B3 DNA binding domain
SMARTSM010194.7E-1073162IPR003340B3 DNA binding domain
SuperFamilySSF1019361.0E-2080162IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-1282161IPR003340B3 DNA binding domain
CDDcd100175.13E-1683160No hitNo description
Gene3DG3DSA:2.40.330.102.1E-2184162IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.0E-24228330IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-21230329IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.352235329IPR003340B3 DNA binding domain
CDDcd100171.96E-14235327No hitNo description
PfamPF023621.2E-16236328IPR003340B3 DNA binding domain
SMARTSM010193.9E-18236329IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGRRSRHRRR REGGGAEPEM DPGSPPSSPH FFKIVLSRAL ESGKLVSSSA LPVSLHTHHS  60
FSRHLRSCPP PLAARTGSSW MSLGIPKSFL RRYGKDLSGL VLLKVPGGST WPVKLEKSDD  120
GKVWLWKGWR GFMEHYSIGH GHLLVFKYEG DSVFHVIIFD KSASEIDYPS SIESDTSSPE  180
EEFLSRKEED VVEMEDSEGS VPCSQPSSDR LSREYGVPSL LAALELASEF KSDHPFFKVV  240
VQPTYVRKSL TIPQEFITKQ VQKDKKIATL RYKDRSWQVK LRSHEHTACL STGWSSFARE  300
NDLLVGDCCV FELIDRDDIV FRVSIVRSDG KNLIYVD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211RRSRHRRRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010052027.10.0PREDICTED: B3 domain-containing transcription factor VRN1
TrEMBLA0A059CD821e-180A0A059CD82_EUCGR; Uncharacterized protein
STRINGXP_010052027.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-20B3 family protein