PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC047285.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 187aa    MW: 19681.3 Da    PI: 8.2183
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC047285.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.5e-201363155
           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  s+y+GVr +k +g+Wv+eIr+p   gk++r++lg+f+t+e+Aa+a++ a++ ++g
  EcC047285.30 13 SCYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFDTPEMAAAAYDVAALHFRG 63
                  79*****999.**********8...557**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.42E-231372IPR016177DNA-binding domain
PfamPF008471.9E-131363IPR001471AP2/ERF domain
SMARTSM003809.1E-361477IPR001471AP2/ERF domain
PROSITE profilePS5103223.3541471IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-321472IPR001471AP2/ERF domain
PRINTSPR003672.9E-101526IPR001471AP2/ERF domain
CDDcd000181.85E-211573No hitNo description
PRINTSPR003672.9E-103753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009535Cellular Componentchloroplast thylakoid membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MEDAGSSRGG TSSCYRGVRK RKWGKWVSEI REPGKKTRIW LGSFDTPEMA AAAYDVAALH  60
FRGCNACLNF PAQAAGLPRP ESSGADDVRM AAHEAALQRR VGAAPPGSSG GGGKSGALNK  120
AAPVTVSLPP AMIAAINEWP LDSPTMWMQM AEALAAPGPC STASNANARD KELFGDAHAE  180
CLLWERI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-171574363ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A8e-171571663ATERF1
3gcc_A8e-171571663ATERF1
5wx9_A1e-16173174Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010062394.11e-134PREDICTED: ethylene-responsive transcription factor ERF021
SwissprotQ9C9I23e-48ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A059BU891e-126A0A059BU89_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010062394.11e-133(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-49ERF family protein